Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00901 ATGATGACTCCTCGAATCGATCCTCTTGAAAAAGGTTCCCCTGTCAGTGAATGTTGGAGAGTGAAGGCCCGTGTTGTCCGCCTCTGGGTCAAAATGGATCTAGCTCTCTTTGGTGAGTTTGTTGATGAATTTAGTAACTTTATTTCAGTTTGTGATGTCCACCGTCCTATTATTGTTGTTCAGTATGCCAAAATCAAGAAGTTTAGAGGGAAGATAGTTTTGCAAAATGTGATGTATGGTACTAGGCTTTTATTCAATCCTGAGATTCCAGAAGTTGAACATTTCAAAAAGAGTCTTCCTCCTCCACTTGATGATAATTCTCAGAGTTGGTCTGTTATGTCTGATACTCAAAATTTAAATATTGAGGATGACTTTCTAAAAGATACACCACGGAAGTCAATTGAAGAATTAAAAGATTGTAAAGATGCTGGTTTCTATGTGGTACTTGGTTCCATTAAGGGTGTGATTACTGACACTGATTGGTGGTACACTGCATGCAAGTGCAATAAGTCTGTTATTGCCGATTCAGGCATGTATTACTGTGATCGGTGTTTCTGTCATGTGACAAATGTTTTTTTGAGATATCGTATCAAGGTTAGAGTCATGGATGAAACTGACAACACAACTTTTGTTATATGGGATCGTGACGGCTTCAAACTATTGAATAAGTCATGTTCTGAATTGGTTGATGAATTTCAGAAGAGCGGTGGAGATGTTATGCCAGATGTTTTTGAACAAAAATTAATCAACAAGGCATTCCTCTTTAAAGTGGAGGTCAAAGATAATGTGGGTTACCAATTCAAACCCTCATTTAGAGTGAAAATGGTTTGTGATGACCAGTCTATTATATCTAAGTTTAAGGATTCTGATCCTTCATTTTTTGCAACAGAGCCTGACTTGGCACCTGGTCTATCTTTGGGGGATGCTTCTTTTAGTATGGATCAACTTGATGTCCCCTCTCCCGTCTCTGAGGACATGGTTATTAATCTGACAGATGGTGATTTCTCCTCTAGAAGCAAAGATGATCTTTCTATTCCGTCGTTCACTCCTCCTAAATCTGCTGTTAATGATGTTGATTATTATCTTGATGGTGACCTTTCATCAAATAGTGCTCACCATCTCACGTCGTCGCTAACCGCTGTGGCTATCACCGACCGTCGTTCACCTGTCACCGTCGATTGCTACTGTCACCGTCGATTACTTCACCGGATCAAGGAGCAAGGAATATTGGTTCTCAACAATGCCATTGGACAGGAGCAAGGAATATCTTTTAGACTTCGTTTTATATCCACCTTGCATAAAGTTGGTGTTGGTGGTGATGGGTGTGTGATTCCGGGTCTGGTTGGAGGAGGCAGTGCTTCTTCCGACGGTGGTGAGGCGAGGGGTGGGGCGGTGGCGGAGTGGGAAAAGATGGAGATTGGGTTTGGGAGAGGATGGAAGATGGAAGATGGGGCAATGGTGGGAGGTAGCCACGAAAGCCACGACAACGAGAGGTGTGGTGAAGGTGGATGA 1512 0.4226 MMTPRIDPLEKGSPVSECWRVKARVVRLWVKMDLALFGEFVDEFSNFISVCDVHRPIIVVQYAKIKKFRGKIVLQNVMYGTRLLFNPEIPEVEHFKKSLPPPLDDNSQSWSVMSDTQNLNIEDDFLKDTPRKSIEELKDCKDAGFYVVLGSIKGVITDTDWWYTACKCNKSVIADSGMYYCDRCFCHVTNVFLRYRIKVRVMDETDNTTFVIWDRDGFKLLNKSCSELVDEFQKSGGDVMPDVFEQKLINKAFLFKVEVKDNVGYQFKPSFRVKMVCDDQSIISKFKDSDPSFFATEPDLAPGLSLGDASFSMDQLDVPSPVSEDMVINLTDGDFSSRSKDDLSIPSFTPPKSAVNDVDYYLDGDLSSNSAHHLTSSLTAVAITDRRSPVTVDCYCHRRLLHRIKEQGILVLNNAIGQEQGISFRLRFISTLHKVGVGGDGCVIPGLVGGGSASSDGGEARGGAVAEWEKMEIGFGRGWKMEDGAMVGGSHESHDNERCGEGG* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00901 503 MobiDBLite consensus disorder prediction 484 503 - -
Rops5g00901 503 SUPERFAMILY Nucleic acid-binding proteins 130 273 IPR012340 -
Rops5g00901 503 Gene3D - 122 286 IPR012340 -
Rops5g00901 503 CDD RPA1_DBD_B_like 29 100 - -
Rops5g00901 503 Pfam Replication factor-A C terminal domain 148 262 IPR013955 -
Rops5g00901 503 Gene3D - 22 101 IPR012340 -
Rops5g00901 503 CDD RPA1_DBD_C 134 273 IPR047192 -
Rops5g00901 503 MobiDBLite consensus disorder prediction 487 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00901 Rops-Chr5 17504359 17516989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00901 22 259 Core DNA Replication Machinery Family AT5G08020 27.381 8.00e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00901 - - ahf:112711209 222.631