Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00899 ATGCCTTTGGAAATGCCAGAATCTGAGGAAGAAAATCCTTACCATCCCCCTAAGTCAAAGCCACAAGATGAACATGGTTTTTCCATGAATTTTGATATTGACCTTGAAAGTTCATGGCCCTTGGATCATATGTCTTTTGTCTCTAACCCCATGTCTCCTTTACTCTTATCCACCATCTCTGAACAACCTTTTTCTCCTGTTTGGGCTTTTTCTGATGTTGAAGATGACAAGCATGTCATCATTGCAGCTTCAGGTAATACAAATACAGTAACTGAAAATCCAGATGAAAATGATGACAAGAAGAAATTTTTTTTACCCCTTGTTGCTCTGCCACCTTTACAAAATCCAGATGGTTATTGTGTAATCAAGGAAAGAATGACACAAGCTCTTAGGTACTTCAAAGAGTTGACTGCACAGAATGTTCTGGCTCAGGTTTGGGCACCCGTGAGGAATGGAAATCGTTATAAACTCACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGTCTCTTTGTTGTATATGTTTTCTGTGGATGGAGAGAATGATGAAAATTTGGGGCTTCCTGGTCGTGTATTTCTGCAGAAATTACCAGAATGGACTCCAAATGTTCAGTATTATTCTAGTAAAGAGTATTCACGGTTAAATCATGCTCTACATTACAATGTCCGTGGAACTTTGGCTCTGCCTGTGTTTGAACCTCCAGGGCAGTCATGTGTTGCTGTATTGGAGTTGATAATGACTTCACAGAAGGTTAACTATGCCCCTGAGGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGATTTGTAATGAAGACCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCCCATGGTGGTGGTTCAAAGAAAAGTTGCTCTAGTTTTGATGGCTATTGTATGGGGCAAGTTTGCATGTCTATAACTGAGGTAGCATTTTATGTCATAGATGCTCACACATGGGGTTTCCATGAGGCCTGTTTAGAGCATCATTTACAACAAGGTCAAGGGGTAGCTGGGAGGGCATTTTTGTCCCACAACATGTGCTTCTGTGGAAACATTACCCAATTTTGCAAAACTGATTACCCTTTAGTACATTATGCTCTCATGTTTGGGTTAACCAGCTGTTTTGCAATATGTTTACAAAGCTCTCATACTGGAAATGATGCTTATGTATTAGAGTTTTTTCTGCCTCCTAGCATCACAGACTTTTATGAACAAAAGACTTTGCTGGGATCCATATTGGCAACAATGAAGCAACATTTCCAGAGTCTTAAGATTGCCTCTGGTGTTGAACTTGAGGGGGATGGTTCAATTGAAATTATAGAAACAATAAATGAAAGAGTTCATTCCAGGCTTGAATCTATTCCAATTATCCAATCGGCTAAATCACCTCCTAGACATGATGCCTCATCAAAAGTGGGGGAGGGGGTGCCACTTGATCCATCAGAACAGAAAATAATGAAGTGCTTTGATGACATCAATGATGGGATCAGTCTTGGTAATAATGCAGGTGGAAGCACTGATCAGATCTCTTCCTTAGAGACCAAAAACAAAAAGAAACCCTCAGAGAGAAAACGTGGAAAAGCTGAGAAATCGATTAGTCTTGAAGTTTTGCAAAATTATTTCAGTGGGAGTCTTAAGGATGCTGCAAAGAACCTCGGTGTTTGTCCTACTACAATGAAACGCATTTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCTTATCCAAGCTAAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGATTGAATTCTCCAAGTTCACTTTTTGTTACCGCTGGTTCCTTTACTGAGCCTTCTACTTCAAACAAGTGTGACCATCAAGCCTCATTCAGCATTAGGCCATCAGAACCAAAGATGAATGAAAATGATTTGGATGCTTCTAAAGTATCAGAAACAAATAAACAGGCTGGGATGGAAGATCAATTGCCAAAAGCAAGGGCACAAAGTCCTGAGAAAGTTACGAATGACAAAGGTGGGTCTACTCAGGAAGTTGGCACTAAAGGGTCAAACAAGTTTAGAATTGGGAATGGTTCAAGTGGTGGTAGTGCAAATCCTACTCCTAATGGTTCATGCCATGGTAGTCCCCCAAATGAAAGTTCTCCTCCAAAAGATATGTTTATAACATGCAACAGTGAGCAATGTTTTGTGTTAAGGGGATCATTGGAGTCAACATTGCAGTCAACTTGTCCCTTGAACTGTGCTGCTACATATCCTATGCCTAATGTTGTGGCAACAGAACCTGAAGAACCATTTGGAGGAATGCTAATTGAGGGTGCTGATAGTTCTAAAGACTTGAGAAATCTGTGTCCTTCAGCAGATGCTGTTTTGGAGGATCAGGTTCCAGAAACTTGTGGGATTAACCTTCCATGTTCTGATTTGGCTCCCATGCAACACATGGATACTCTTAATGACACTATGACACCTTTTGCAGCCAGGAAAGAGATGAAGAGTGTGACCATTAAAGCAACATATAGAGAAGATATCATAAGGTTTAAGGTCTCTGAGGACTGTGGCATTGTGGAATTGAAAGAAGAAATTGCCAAAAGGCTGAAACTAGAGGTGGGTACATTTGATATTAAGTATCTGGATGATGATCATGAATGGATTTTGGTAGCATGTGATGCAGACCTGCAGGAGTGCATGGAGATTCTAAGATCATCAGTCAGCAACATTATCAGGCTTGTGGTGCATGATATAATGTCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGGGAGTGA 2943 0.4074 MPLEMPESEEENPYHPPKSKPQDEHGFSMNFDIDLESSWPLDHMSFVSNPMSPLLLSTISEQPFSPVWAFSDVEDDKHVIIAASGNTNTVTENPDENDDKKKFFLPLVALPPLQNPDGYCVIKERMTQALRYFKELTAQNVLAQVWAPVRNGNRYKLTTSGQPFVLDPHSNGLHQYRTVSLLYMFSVDGENDENLGLPGRVFLQKLPEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKVNYAPEVDKVCKALEAVNLRSSEILEHPYSQICNEDRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGSKKSCSSFDGYCMGQVCMSITEVAFYVIDAHTWGFHEACLEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGNDAYVLEFFLPPSITDFYEQKTLLGSILATMKQHFQSLKIASGVELEGDGSIEIIETINERVHSRLESIPIIQSAKSPPRHDASSKVGEGVPLDPSEQKIMKCFDDINDGISLGNNAGGSTDQISSLETKNKKKPSERKRGKAEKSISLEVLQNYFSGSLKDAAKNLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGLNSPSSLFVTAGSFTEPSTSNKCDHQASFSIRPSEPKMNENDLDASKVSETNKQAGMEDQLPKARAQSPEKVTNDKGGSTQEVGTKGSNKFRIGNGSSGGSANPTPNGSCHGSPPNESSPPKDMFITCNSEQCFVLRGSLESTLQSTCPLNCAATYPMPNVVATEPEEPFGGMLIEGADSSKDLRNLCPSADAVLEDQVPETCGINLPCSDLAPMQHMDTLNDTMTPFAARKEMKSVTIKATYREDIIRFKVSEDCGIVELKEEIAKRLKLEVGTFDIKYLDDDHEWILVACDADLQECMEILRSSVSNIIRLVVHDIMSILGSSCESSGE* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00899 980 SMART PB1_new 885 967 IPR000270 GO:0005515
Rops5g00899 980 MobiDBLite consensus disorder prediction 721 772 - -
Rops5g00899 980 ProSiteProfiles PB1 domain profile. 885 967 IPR000270 GO:0005515
Rops5g00899 980 MobiDBLite consensus disorder prediction 1 27 - -
Rops5g00899 980 MobiDBLite consensus disorder prediction 664 684 - -
Rops5g00899 980 PANTHER PROTEIN NLP8 61 979 IPR045012 GO:0003700
Rops5g00899 980 ProSiteProfiles RWP-RK domain profile. 569 650 IPR003035 -
Rops5g00899 980 MobiDBLite consensus disorder prediction 563 580 - -
Rops5g00899 980 MobiDBLite consensus disorder prediction 664 772 - -
Rops5g00899 980 MobiDBLite consensus disorder prediction 551 580 - -
Rops5g00899 980 CDD PB1_NLP 886 966 IPR034891 -
Rops5g00899 980 Gene3D - 882 966 - -
Rops5g00899 980 MobiDBLite consensus disorder prediction 8 27 - -
Rops5g00899 980 Pfam PB1 domain 886 966 IPR000270 GO:0005515
Rops5g00899 980 SUPERFAMILY CAD & PB1 domains 882 970 - -
Rops5g00899 980 Pfam RWP-RK domain 582 630 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00899 Rops-Chr5 17481847 17489184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00899 256 980 NLP Transcription Factor Family AT4G24020 52.933 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops5g00899 PB1 3.5e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00899 - - gmx:100780901 1576.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00899 5 17481847 17489184 Rops6g02724 6 48923700 48928421 PCT