Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops5g00891 | ATGGAGATGTTGGTGCTACCAGCACTTGCTTTCTTGGCAATATTAGCTCTCTTCTTGCTCTTGAAACTCATGTTTTCTTGGTGGGTTTCACCTATCCAAACACATCACAAGCTTAAAAGATGTGGGTTTAGAGGGCCACCCCCAAGTTTTCCACTTGGAAATATTCAAGAGATGAAAAAGAAGATTAGCGTTAATTCTTCACTTGGCTCCTCAAAGCTCACCCATGATATACACTCCATTGTTTTCCCCTATTTTTCTCGGTGGCGAAATTCTTACGGAAAGGTCTTCATCTACTGGCTTGGAGTAGAACCGTTTTTGTACATTGCAGATCCAGAATTCTTGAAGAAAATGTCAACAGAAGTGATAGCTAAGAGATGGGGAAAACCGAATGTGTTTAGAAATGACAGAGACCCCATGTTTGGAAAAGGTTTGGTCATGGCTGAAGGCAACGAATGGGTTAGTCACCGGCATGTTATAGCCCCAACATTTTCACCCCTTAACTTGAAGGCAATGGCAAACATGATGATTGAGTCTACAAATCAAATGATAGATAGATGGATTACCCAAATCAACTCCGGTAACCATGAAATTGATGTGGAGAGGGAGGTTATCGCAACAGCTGGAGAGATCATAGCAAGAACATGCTTTGGGATGAAGAATGAAAATGCAAGGGAAGTGTCTCAAAAATTGAGAGCCCTACAAATGACACTATTTAAGACAACAAGATATGTAGGGGTTCCAATGGGCAAGTTTTTCAACATCAAGAAAACCTTAGAGGCCAAGAAACTTGGGAAGGAGATAGATAGGCTCTTGTTGTGTGTCATAAAATCTCGCCAGAAATCAATCAAAAAAAATGCTCGAGAAGACTTATTAGGATTGTTGTTGCAAGAAAATCATCAAGTTGATGGAAAGTTAGGGAAGACATTAACCACAAGACAATTGGTGGATGAGTGCAAGACTTTCTTCTTTGCTGGTAATGAGACAACAGCATTAGCTGTCTCATGGACTTTGTTGCTTCTAGCCACGCATGAAGATTGGCAAATCCAGTTAAGAGATGAGATAAGAGAAGTGGTCGGTGATAAAGAAGTTGATATCAACCTCCTTGCTGGGCTGAAAAAGATGAAGTGGTTGATGAGTGAAGCTCTAAGACTTTACCCAACAGCACCAAATGTGCAAAGGCAAGCAAGAGAAGACATTCAAGTTGGTAATTTAACAGTGCCTAATGGGACCAACATATGGATCGATGTTGTGGCGATGCACCATGATCCAGCATTATGGGGAAAAGATGTGAGTGAGTTTAGACCAGAAAGGTTCATGGATGATGTTAATGGTGGATGCAACCACAAGATGGGGTACTTGCCTTTTGGGTTTGGAGGGAGGATGTGTGTTGGTAGGAACTTGAGCTTTATGGAGTATAGGATAGTGTTAACCCTTCTCCTCTCTAGATTTAGTTTTAAACTCTCCCCAAGTTATAGCCATTCACCTTCTATCATGCTCTCCCTTAGGCCCACTTATGGACTTCCTCTCATAGTTCAGCCCCTTTAA | 1545 | 0.4149 | MEMLVLPALAFLAILALFLLLKLMFSWWVSPIQTHHKLKRCGFRGPPPSFPLGNIQEMKKKISVNSSLGSSKLTHDIHSIVFPYFSRWRNSYGKVFIYWLGVEPFLYIADPEFLKKMSTEVIAKRWGKPNVFRNDRDPMFGKGLVMAEGNEWVSHRHVIAPTFSPLNLKAMANMMIESTNQMIDRWITQINSGNHEIDVEREVIATAGEIIARTCFGMKNENAREVSQKLRALQMTLFKTTRYVGVPMGKFFNIKKTLEAKKLGKEIDRLLLCVIKSRQKSIKKNAREDLLGLLLQENHQVDGKLGKTLTTRQLVDECKTFFFAGNETTALAVSWTLLLLATHEDWQIQLRDEIREVVGDKEVDINLLAGLKKMKWLMSEALRLYPTAPNVQRQAREDIQVGNLTVPNGTNIWIDVVAMHHDPALWGKDVSEFRPERFMDDVNGGCNHKMGYLPFGFGGRMCVGRNLSFMEYRIVLTLLLSRFSFKLSPSYSHSPSIMLSLRPTYGLPLIVQPL* | 515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops5g00891 | 514 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 455 | 464 | IPR017972 | GO:0005506|GO:0016705 | |
| Rops5g00891 | 514 | SUPERFAMILY | Cytochrome P450 | 76 | 513 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | Pfam | Cytochrome P450 | 78 | 494 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | Gene3D | Cytochrome P450 | 28 | 513 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 19 | 506 | - | - | |
| Rops5g00891 | 514 | PRINTS | P450 superfamily signature | 376 | 387 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | P450 superfamily signature | 462 | 473 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | P450 superfamily signature | 324 | 341 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | P450 superfamily signature | 453 | 462 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | E-class P450 group I signature | 89 | 108 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | E-class P450 group I signature | 462 | 485 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | E-class P450 group I signature | 333 | 359 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | E-class P450 group I signature | 313 | 330 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | E-class P450 group I signature | 416 | 440 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | E-class P450 group I signature | 452 | 462 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Rops5g00891 | 514 | PRINTS | E-class P450 group I signature | 206 | 224 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops5g00891 | Rops-Chr5 | 17272550 | 17277698 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops5g00891 | 10 | 514 | Cytochrome P450 | AT5G52400 | 57.926 | 0.0 | 643 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops5g00891 | - | - | gmx:100810679 | 877.856 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops5g00891 | 5 | 17272550 | 17277698 | Rops5g00891 | 5 | 17272550 | 17277698 | ECH | |
| Rops5g00891 | 5 | 17272550 | 17277698 | Rops6g02728 | 6 | 49030835 | 49036327 | PCT | |
| Rops6g02729 | 6 | 49044484 | 49048719 | Rops5g00891 | 5 | 17272550 | 17277698 | PCT |