Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00887 ATGGAAACCCCAATAACCCTCACTGGGTTGCTCCGCCGCGTCGCCGGAAAATTTCCATCCCGACGAGCCATCTCCGTTGCCGGAAAATTCGACCTCACTCACTCCCGCCTCCACCAATTGGTCGAATTCGCCGCCGCTCGCTTGGTATCTGCCGGAATCAAGCCCCACGATGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGTATGTTATAATGTTTTTAGCCGTTATTCGAGCACGAGCGACAGCGGCGCCGTTAAACCCTGCTTACACAGCCGAAGAGTTCGAGTTTTATTTATCCGACTCAGAATCGAAGCTTCTGTTAACCCCGTTAGATGGTAACAAGCCAGCTCAAGCCGCGGCTTCAAAGCTCAACATTCCTTGCGGCTCGGCTTCGCTTACACAAGCCGAAGGAGAACAAGCCGAGCTGAGCGTCTCTCTGAACCAGCCCGAGTCAGACTCGGTTAACTCGCTCACCGGACTCAGTAACGACCCTTCCGACGTGGCACTTTTTCTCCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGCTGACTCAGCACAACTTGGTCTCATCGGTGAGAAACATCGACTCAGTTTACCGACTCACTGAGTCAGACTCGACGGTGATTGTGCTTCCCTTGTTCCACGTTCACGGGTTGATCGCCGGGTTACTGAGTTCACTCGGTGCCGGTGCGGGGGTTGCGTTACCAGCCGCGATGAGATTCTCAGCGACGTCGTTTTGGAAGGATATGGTTAAGTACAACGCCACGTGGTACACTGCGGTTCCTACCATACACCAGATCATACTGGATCGTCACCTTAATAACCCTGAACCGGTTTACCCGAGGCTCCGGTTTATTCGGAGTTGTAGCGCGTCGCTCGCACCGGTTATTTCGGATCGGTTAGAGGAGGCATTCGGAGCCCCGGTTTTGGAGGCTTATGCTATGACTGAGGCCTCTCATCTCATGGCTTCGAACCCTTTGCCTCAAGATGGGCCCCACAAGACCGGGTCGGTTGGGAAACCCGTGGGTCAAGAGATGGTAATATTGGATGAAGCGGGTCGGATCCTAGAGGCTGAGGCTAGTGGAGAAGTTTGTATTCGGGGACCCAATGTTACAAAAGGGTATAAAAACAACCTCGAAGCCAATACGGCGGCGTTTCAGTTTGGTTGGTTTCATACTGGTGATCTTGGATACTTTGATTCGGATGGGTATTTGCATCTCGTGGGTCGGATCAAGGAGCTCATAAACAGAGGAGGAGAGAAAATATCACCAATGGAAGTGGATGCTGTCCTTTTATCACATCCAGATATTGCTCAAGCAGTTGCTTTCGGAGTGCCAGATGAGAAATATGGGGAAGAGATATATGGTGCAATCATCCCAAGAGAAGAATCAAACATTGATGAGGCAGAGGTGCTAAGATATAGCAAGAAGAATCTCGCATCTTTCAAAGTACCCAAAAAGTTCTTCATTACTGATTCTTTGCCTAAGACTGCCACTGGCAAGATTTTGCGCCGTCTTGTTGCAGAACACTTCGTTTCTCAAATTTGA 1557 0.5145 METPITLTGLLRRVAGKFPSRRAISVAGKFDLTHSRLHQLVEFAAARLVSAGIKPHDVVALTFPNTVEYVIMFLAVIRARATAAPLNPAYTAEEFEFYLSDSESKLLLTPLDGNKPAQAAASKLNIPCGSASLTQAEGEQAELSVSLNQPESDSVNSLTGLSNDPSDVALFLHTSGTTSRPKGVPLTQHNLVSSVRNIDSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLGAGAGVALPAAMRFSATSFWKDMVKYNATWYTAVPTIHQIILDRHLNNPEPVYPRLRFIRSCSASLAPVISDRLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHKTGSVGKPVGQEMVILDEAGRILEAEASGEVCIRGPNVTKGYKNNLEANTAAFQFGWFHTGDLGYFDSDGYLHLVGRIKELINRGGEKISPMEVDAVLLSHPDIAQAVAFGVPDEKYGEEIYGAIIPREESNIDEAEVLRYSKKNLASFKVPKKFFITDSLPKTATGKILRRLVAEHFVSQI* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00887 518 SUPERFAMILY Acetyl-CoA synthetase-like 4 516 - -
Rops5g00887 518 CDD FACL_fum10p_like 19 512 IPR045310 GO:0016874
Rops5g00887 518 Pfam AMP-binding enzyme C-terminal domain 429 504 IPR025110 -
Rops5g00887 518 Pfam AMP-binding enzyme 12 420 IPR000873 -
Rops5g00887 518 FunFam Peroxisomal-coenzyme A synthetase 6 413 - -
Rops5g00887 518 Gene3D - 5 413 IPR042099 -
Rops5g00887 518 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Rops5g00887 518 PANTHER ACYL-COA SYNTHETASE 6 515 - -
Rops5g00887 518 Gene3D - 414 516 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00887 Rops-Chr5 17074506 17078899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00887 6 518 Monolignol Biosynthesis Gene Families AT4G05160 31.015 4.05e-61 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00887 K22133 - gmx:100779306 859.366