Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00863 ATGGGAAAAGCACCATGTTGTGATAAACATGAAGTGAGGAGAGGAGCTTGGACTCCTGAAGAAGATGAAGCATTAGTTGAGTATATTAACAAGCATGGTCATGGAAGTTGGCGTACACTTCCCAAGCAAGCAGGCCTCCTTCGATGTGGAAAAAGTTGCCGGCTTCGATGGATAAATTATCTTCGCCCTGACATAAAGCGTGGCCCATTTACTACTGAGGAAGAAAGTACAATTATTCAGCTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTTCCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAACACCCAACTAAAGAAGCGCCTCCCTCAGTTAGGACATTCCTTAGGAACACAGCAACAACACTCTCTCAGTCCTGATCATAGTGTTGCCAAATCTGAATCTCCTTCTACACGCCACATGGCACAATGGGAAAGTGCTAGAATTGAAGCGGAAGCAAGGTTATCAATGGAATCAGCATTGCTTAATACACTGTCAACAAGTGAAACATACAGTGATTATTTTCTTCAGCTTTGGCATTCTGAAGTTGGACAATCATTTCGCATGATCAAAGGAAAAGAAGTAGTGTGTCAAAGTCCTATCTCACAAGCATCATCATCCTCAAAATTGGAGTCATGTTCAGATGTCTCCTTGAAGGTTAAGAACACTGAAAACAGTGCCTTAGCAAACAAGTCACAAGAACAAGCTAGAAGCTATAAACCAAAGCTTGAAGATGGCACAGGTGGGTCAGAATCAGGCTACTATGAATTTCTTGATACTTCTGATTCTGCATTAAATCAACTGCTAGATATGCCTGATGGTGAAACAGGATTCTTAGGACAAAATGACAGTTTCCTGAATACCCTTTATGGAAGATGTGACTAA 906 0.4183 MGKAPCCDKHEVRRGAWTPEEDEALVEYINKHGHGSWRTLPKQAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEESTIIQLHAMLGNRWAAIASQLPGRTDNEIKNYWNTQLKKRLPQLGHSLGTQQQHSLSPDHSVAKSESPSTRHMAQWESARIEAEARLSMESALLNTLSTSETYSDYFLQLWHSEVGQSFRMIKGKEVVCQSPISQASSSSKLESCSDVSLKVKNTENSALANKSQEQARSYKPKLEDGTGGSESGYYEFLDTSDSALNQLLDMPDGETGFLGQNDSFLNTLYGRCD* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00863 301 MobiDBLite consensus disorder prediction 231 255 - -
Rops5g00863 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops5g00863 301 MobiDBLite consensus disorder prediction 122 148 - -
Rops5g00863 301 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops5g00863 301 CDD SANT 16 61 IPR001005 -
Rops5g00863 301 CDD SANT 69 110 IPR001005 -
Rops5g00863 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops5g00863 301 FunFam MYB transcription factor 69 116 - -
Rops5g00863 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops5g00863 301 Gene3D - 69 116 - -
Rops5g00863 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops5g00863 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops5g00863 301 Gene3D - 14 66 - -
Rops5g00863 301 FunFam Myb transcription factor 11 67 - -
Rops5g00863 301 SMART sant 66 114 IPR001005 -
Rops5g00863 301 SMART sant 13 63 IPR001005 -
Rops5g00863 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops5g00863 301 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00863 Rops-Chr5 16587400 16590213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00863 1 292 MYB Transcription Factor Family AT3G61250 51.768 2.43e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g00863 Myb_DNA-binding 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00863 K09422 - gmx:100782075 438.728