Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00862 ATGGGGTACCAGTCACTAGATAAAGCAAAACCAAAACACAGAAAGGGGTTATGGTCACCTGAAGAAGATGAAAAGCTCAGAAACCATATTCTTAAGCATGGTCATCCCTGCTGGAGCTCTGTCCCCAGTAAGGCAGGTTTGCAAAGGAATGGAAAGAGCTGCAGACTAAGGTGGATCAACTACCTGAGGCCAGGATTGAAGAGAGGGATGTTCAGCAAACAGGAGGAAGATACAATCCTGACCCTTCACCACATGTTGGGCAACAAGTGGTCTCAGATAGCACAACAATTGCCAGGAAGAACTGACAATGAGATAAAAAACTACTGGCATTCATATTTGAAAAAGAAAGTGGCCAAAGCTAAGGAAATGGATTCTCATAAACAAATTCGCCATGCTAGCTCAAGCTCAGATACAATGGATTCCTCACTCTCACCCCAGAAACTTGCAACTCAAGATCCTAATAATTTATTATTAGAAAACATGGACAAATCAGCAACACATTCTGATCACTCTTTTTCACAGAATTATATCTCTACCAAGGAAGCTTGTCAAAGCTCCTTACCAAAACTGTTATTTGCAGAGTGGCTTTCAGTGGATCATGTAAATGGTGGCAGCTCTGTAAGTTCAGATGACTCTTTGGCCATGGGGAATGGATTTGATCAAAATTCAACTTTTCAAGAAACTGTAATGCATATGTCAGAAGGACACTTTGGTGAAGAGTATCATGATAGTCTGATTCACAGTTCAGCCTCTGAGATGTACAATTCACAGCTTAAGATATCAAATCAAGGGTATGAAAATGACTTAGTCCATTTTATACATGGGACTGATTTGTGTGACAATTTCACCCTCAACAATGATGCAATGTACTTATGA 876 0.403 MGYQSLDKAKPKHRKGLWSPEEDEKLRNHILKHGHPCWSSVPSKAGLQRNGKSCRLRWINYLRPGLKRGMFSKQEEDTILTLHHMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKVAKAKEMDSHKQIRHASSSSDTMDSSLSPQKLATQDPNNLLLENMDKSATHSDHSFSQNYISTKEACQSSLPKLLFAEWLSVDHVNGGSSVSSDDSLAMGNGFDQNSTFQETVMHMSEGHFGEEYHDSLIHSSASEMYNSQLKISNQGYENDLVHFIHGTDLCDNFTLNNDAMYL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00862 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops5g00862 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Rops5g00862 291 MobiDBLite consensus disorder prediction 121 149 - -
Rops5g00862 291 SMART sant 67 115 IPR001005 -
Rops5g00862 291 SMART sant 14 64 IPR001005 -
Rops5g00862 291 CDD SANT 71 113 IPR001005 -
Rops5g00862 291 CDD SANT 18 62 IPR001005 -
Rops5g00862 291 Gene3D - 70 142 - -
Rops5g00862 291 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Rops5g00862 291 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Rops5g00862 291 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Rops5g00862 291 MobiDBLite consensus disorder prediction 1 21 - -
Rops5g00862 291 FunFam MYB transcription factor 12 68 - -
Rops5g00862 291 MobiDBLite consensus disorder prediction 7 21 - -
Rops5g00862 291 Gene3D - 15 67 - -
Rops5g00862 291 MobiDBLite consensus disorder prediction 134 149 - -
Rops5g00862 291 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Rops5g00862 291 FunFam MYB transcription factor 70 141 - -
Rops5g00862 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops5g00862 291 PANTHER MYB DOMAIN PROTEIN 55 7 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00862 Rops-Chr5 16577186 16579973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00862 4 237 MYB Transcription Factor Family AT5G52260 47.737 6.34e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g00862 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00862 K09422 - gmx:100803537 447.973