Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00859 ATGGGTGTGAAAAATTTGTGGGATGTTCTTGAATCTTGCAAGAAAACGGTTCCCCTTCACCATCTCCAGAACAAGCGTGTGTGCGTGGACCTATCGTGTTGGATGGTGCAACTTCAGAATGTGAGCAAGTCACATGCATGTGTTAAGGAGAAAGTGCACCTCAGAGGACTCTTTCACCGACTCAGAGCACTCATTGCCCTCAATTGTAGTGTTGTTTTCGTTGCAGATGGATCAATTCCTGCCATTAAATTGTCAACTTATAGGCGTCGGTTAAATGTTGGAAAGGAGGTAACTCAAAATGAAACTAACTTACAGAAAGTGACATCGTTACGAAGAAACATGGGGTCTGTGTTTTCTGTCATGATAAAAGAGGCTAAAGTCTTGGGGATGACTCTTGGCATCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTATGAATTATTATGTGATGGATGTTTCAGTTCGGATTCAGATATATTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGGCAGACATAGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGACTATTTTCAAGGAGTTCATGGTCTTGGTCCAGAGTCAGCTTGTCAGATTGTCAAATCAATTGGGGACAAATTTGTTCTTAAAAAAATTGCTTTTGAAGGACTTGAATGGGTGAAAAAAAGAAAAGGAACTGAGAATAATTTACAGAGGGATGATAACATTTTACAAGTTATCAATGCTTATGAGAAGCCAAAATGCCACCCTGCAGATTCAGATATTGTGCACAGGGCTCTTGCTCAGTATCCCTTTCAACGTATTAAACTCCAGCAGATATGTGCAGAATTTTTTGAGTGGCCTTCGGAGAAAACAGATGGATATATCCTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGATTAACTTCATCTGAACTTGGATTAAACCTTCCTTTACGTGAGATCCCCGTGAAGTGTCCCGTCTCAGAAATCATTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTATGAGGTTTCTTGGGAAGACATGGATGGACTTGAAACTTCAGTAGTACCTGCAGATCTTATAGAAAGTGCCTGTCCTGAAAAGATTTTAGAGTTTGAGGAGAAGAAAGCTCAACGGAAGAAACAAAATGTTCAGAAAAGAAGACCAAAGAAAAAGGAAACTTTTTCAATGGCTGAGCTTGATCTAAAACTTCAGAATTTGTTGCTGGATAATAATATAGGAGATCCAGCCAACCTCAATGCCTCTGATTCTTCAGGAAGAATATTAGAAGTTACAACTGCTATGGATGAAGCTGATCTGAATACTGCAGACTTGTTGCACCAATCACATGATGGGTCAATTCAGAATTTCAGCAACATATCAACCAATGAGGCTGTTTCCAGTATAGATAAAAATGAGGTCATAGATCTTTTGAGCCCTTACCCCCCTAAGAAATCCCATACTTCCTCAAAATGTGAGCAATCAAGTGACCAACATGTTGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCACCTGAACACAAGGAAAAGGCAAAGGAGCTGAGATTGTTCTTAGCAAGTATTAGAAATGAAATCCATTGA 1704 0.3967 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLQNVSKSHACVKEKVHLRGLFHRLRALIALNCSVVFVADGSIPAIKLSTYRRRLNVGKEVTQNETNLQKVTSLRRNMGSVFSVMIKEAKVLGMTLGISCLNGIEEAEAQCALLNYELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIERKLGFGRDSLIALSLLLGSDYFQGVHGLGPESACQIVKSIGDKFVLKKIAFEGLEWVKKRKGTENNLQRDDNILQVINAYEKPKCHPADSDIVHRALAQYPFQRIKLQQICAEFFEWPSEKTDGYILPSIAERDLRRFANLRLTSSELGLNLPLREIPVKCPVSEIIKSRRVQGRECYEVSWEDMDGLETSVVPADLIESACPEKILEFEEKKAQRKKQNVQKRRPKKKETFSMAELDLKLQNLLLDNNIGDPANLNASDSSGRILEVTTAMDEADLNTADLLHQSHDGSIQNFSNISTNEAVSSIDKNEVIDLLSPYPPKKSHTSSKCEQSSDQHVEVINLSDSENDMSPEHKEKAKELRLFLASIRNEIH* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00859 567 SMART HhH_4 202 235 IPR008918 GO:0003677|GO:0003824
Rops5g00859 567 CDD CD_CSD 358 406 - -
Rops5g00859 567 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Rops5g00859 567 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Rops5g00859 567 SMART xpgineu 130 200 IPR006086 GO:0004518
Rops5g00859 567 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Rops5g00859 567 Gene3D - 355 423 - -
Rops5g00859 567 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Rops5g00859 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Rops5g00859 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Rops5g00859 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Rops5g00859 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Rops5g00859 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Rops5g00859 567 FunFam Flap endonuclease GEN-like 1 200 258 - -
Rops5g00859 567 Gene3D - 2 199 - -
Rops5g00859 567 CDD H3TH_XPG-like 203 239 - -
Rops5g00859 567 SMART xpgn3 1 97 IPR006085 GO:0004518
Rops5g00859 567 CDD PIN_GEN1 2 198 - -
Rops5g00859 567 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 518 IPR006084 -
Rops5g00859 567 FunFam flap endonuclease GEN-like 2 2 199 - -
Rops5g00859 567 Gene3D - 201 273 - -
Rops5g00859 567 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00859 Rops-Chr5 16538071 16551328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00859 1 236 Core DNA Replication Machinery Family AT5G26680 25.882 2.09e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00859 K15338 - gmx:100806919 958.362