Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00852 ATGTTTGAGTTTCACCTCAAACAGTTCTACTTCACATGGGTCCTTCACCTCCAACTTTTGCACCATGTTGTTGTTGATGCACAATCATCCATGGTGCCAGTTCCAACATACATCTCCTCCCACCATAATTGGGAACCTTCTATTGCAATCACAGTTGGAGCCATCATCTTCATCCTTCTCTTAATGGGAATCATCTCACTTTACATCCGTAAATGCACCCAATCACGCTTCATCATCGCTCAAACAAATTCTAACACCACAAATAGGTCATGTTCTTGTTCACAAGGCATCAACAAGGAACTCCTTGAGACCTTTCCAATCCTCTTTTTTTCCAACATCAAGGACCTCAAAACAGGTAAAGGACCACTTGAATGTGCAGTGTGTTTGACAGATTTCAAAGACCAAGACACCCTAAGGTTACTACCCAAATGCAACCACGTTTTCCACCCTCAATGCATTGATTCATGGCTGGCTTGTCACATGACTTGCCCCGTTTGCCGTGCAAATCTGAACCAAGATTCATGTCAAGTTGCCATAACTGTGCCGACCCATTTGAGCAATGATCAAATGGGTGAAGAAGGTTCTAGAATCAGAGCTGAAACTCAAGCAGATGAAGAGAACGAAATAGAATCAAACCCAAACCAAAACCCAGTTGTTCAAAACGAAGGTGAGGGTAATTGTGACGATGGGGTTGCATCAAAATTGAACCTTTCGAGGTCAAATTCAACGGGTCATGTGCTTGTTGAGCCAGTGAAGTGTGAGGAGAGGTACACGTTAATGTTACCAGAGGATGTAAGAAGGTACATTCTCGTCAACAATGAAAGAAGGGTTCAGCTTTCTTCGAGTTGCTACAACAACGACAACGTGGTTAAGGGGTCATGTTGCAGTGACAGTGAAGGTGTCAGCATAGAGAAGAGGACCAATGGCGAGACTATGGTGGAAAGGTGGGTACTTTGTGCGCAACCATTTGTAGCGCGTAATGGTTGA 987 0.4387 MFEFHLKQFYFTWVLHLQLLHHVVVDAQSSMVPVPTYISSHHNWEPSIAITVGAIIFILLLMGIISLYIRKCTQSRFIIAQTNSNTTNRSCSCSQGINKELLETFPILFFSNIKDLKTGKGPLECAVCLTDFKDQDTLRLLPKCNHVFHPQCIDSWLACHMTCPVCRANLNQDSCQVAITVPTHLSNDQMGEEGSRIRAETQADEENEIESNPNQNPVVQNEGEGNCDDGVASKLNLSRSNSTGHVLVEPVKCEERYTLMLPEDVRRYILVNNERRVQLSSSCYNNDNVVKGSCCSDSEGVSIEKRTNGETMVERWVLCAQPFVARNG* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00852 328 CDD RING-H2_EL5-like 124 167 - -
Rops5g00852 328 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Rops5g00852 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 273 - -
Rops5g00852 328 Pfam Ring finger domain 124 167 IPR001841 -
Rops5g00852 328 MobiDBLite consensus disorder prediction 208 222 - -
Rops5g00852 328 SUPERFAMILY RING/U-box 124 173 - -
Rops5g00852 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 174 IPR013083 -
Rops5g00852 328 SMART ring_2 125 166 IPR001841 -
Rops5g00852 328 MobiDBLite consensus disorder prediction 191 205 - -
Rops5g00852 328 FunFam E3 ubiquitin-protein ligase ATL6 84 173 - -
Rops5g00852 328 MobiDBLite consensus disorder prediction 186 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00852 Rops-Chr5 16389785 16391402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00852 27 270 Rapid Response to Elicitors AT3G05200 36.400 3.45e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00852 K10664 - gmx:100782532 325.865