Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00841 ATGGCTAGTGTTTCCATTGTTGAGCCCTCTCATTTTTCTCTACCCATCATTACCATTTCAAAGCAAAATCTCTCTACCTTATCTTTAACCACTCTAAGGAAAATGGAGGGTCATGGTGAGATGGGTCTTATTGGAGAAAATTTTGATTCTGGTTTGCTTGGGAGGATGAGGGATGATGAATATGAAAGCCGATCTGGAAGTGATAATTTTGAAGCTGGATCTGGTGATGATCAAGATGCTGGTGATGATCAACCACAGAGGAAGAAAAAATACCATAGACACACTCCGCAACAAATTCAGGAGCTTGAAGCTTTCTTTAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGATCAGATCTTAGTAAGAGACTTAGCTTAGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATAGAAGAACTCAAATGAAGACACAACTTGAACGCCATGAGAACATGATTCTTAGACAGGAAAATGAGAAGCTCCGAGCTGAGAACAGTGTGATGAAGGATGCTTTGGCAAATCCAGTTTGTAACAGCTGTGGTGGCCCTGCCATTCCTGGCCAAATTTCATTAGAGGAGCACCAGATGAGAATTGAAAATGCTAGACTAAAGGATGAATTGAACCGAATATGTGCCTTGGCAAGCAAGTTTCTGGGCCGGCCAATCTCACCATTGGCCAGTCCCATGGCTATGTCAACCCCAAATTCTGGTCTAGAACTTGCTATTGGAAGAAATGGGGTTGCTAGTTCAAGCAATTTTGGCATGTCCTTGCCAATGGGACTTGATGTGGGAGATGGAGTGATGGGCACTTCACCTATGCTATCTGGGATTAGATCACCAATGGGAATGATGGGAAATGAAGTCCAGCTTGAGAGATCCATGCTTGTAGATCTTGCATTAGCTGCAATGGATGAATTACTTAATATGGCTCAGCCAAATAGCCCTCTTTGGATTAAGAGTTCGGATGGCCAGAAGGAAGTACTGAACCATGAGGAGTATGCAAGGATATGTTCTTCTTTTATTGGTTCAAAGCCGAATGGTTATGTAACTGAAGCTACAAGAGAAACTGGGGTAGTAATAATCAACAGTTTGGGCCTTGTGGAAACATTGATGGATGCGGATCGATGGTCAGAGATGTTTCCATCTATCATTGCTAGAGCTGTCACCCTGGATGTAATATCTAGTGGCATGGGTGGAAGCAGAAGTGGAGCTTTGCAAGTGATGCAAGCTGAAGTTCAATTACCTTCTCCACTAGTCCCTGTTCGTCAGTATAGTTTCCTCAGGTTTTGCAAGCAGCATGCAGAAGGTGTGTGGGTTGTGGCTGATGTTTCCATTGACATTGGTCGCAATGCTACCAATGCAAACGCATTGAGCTGTAGGAAGCTTCCTTCTGGCTGTGTTGTGCAGGATATGCCCAATGGTTTCTCCAAGATAACTTGGGTTGATCATTCCCAGTATGATGAGAATGTTGTCCACCAACTCTATCGCCCAATGGTTAATTCTGGCATTGGCTTTGGTGCTCATAGATGGGTTGCAACTCTCCAAAGGCAGTGTGAATCCTTTGCAATCTTCATGTCCTCTTCCCCACCATCTGATGACCCTACAGACATGAGCCAAGCTGGTAGGAGAAGCATGCTGAAGCTTGCACAGCGCATGAGTGATTACTTCTGGTCTGGTGTTTGTTCTTCATCGGCGTGCAAGTGGGACATCCTTCACTTTGGTACTCTGGGTAACAATGACATGAAGATCATGTCCCGGAAACATCTCGAAGGTCCTGGTGAGGCTGCCGGCATTGTGCTGAGTGCTGCAACTTCTGTTTGGATGCCGGTTTCAAGGCAAAGGGTGTTTGATTTCCTGCGTGAGGGAAGATTGAGAGGAGAATGGGATGTCTTGTCCAATGGTGGATCAATGCAGGAGATTCTCCATATTGCTAAGGGACAAGGTCCTGGAAATTGTGTTTCTATCCTTCGTGCTAATAATGCTGCTAATGGCAACGAGAACAACGTGCTATATCTGCAAGATTCATGGAGCGATACCTCCGGCTCAATGATCGTGTATTCGCCAATCAACATGCAATCCTTGACTTTGGTGATGAATGGTGGAGATTCTTCATATGTTACTCTCTTGCCTTCAGGTTTTGCCATTCTTCCAGATGGTAATTCAAACAACAGTGATCTCGGGACTTCAAGTGGCAGCAGTGGTGATGGTGGAGGATGCCTCCTCACAGTTGGGTTACAAATGTTGCTGAGTAGCCTCCCAACAGCTAAGCTCACAGTGGAGTCAGTTGATACTGTCAATGCCCTCATCTCATGCACCCTTCAGAAGATCAAAGATGCACTTGGAGTTGCATGA 2352 0.4494 MASVSIVEPSHFSLPIITISKQNLSTLSLTTLRKMEGHGEMGLIGENFDSGLLGRMRDDEYESRSGSDNFEAGSGDDQDAGDDQPQRKKKYHRHTPQQIQELEAFFKECPHPDEKQRSDLSKRLSLENKQVKFWFQNRRTQMKTQLERHENMILRQENEKLRAENSVMKDALANPVCNSCGGPAIPGQISLEEHQMRIENARLKDELNRICALASKFLGRPISPLASPMAMSTPNSGLELAIGRNGVASSSNFGMSLPMGLDVGDGVMGTSPMLSGIRSPMGMMGNEVQLERSMLVDLALAAMDELLNMAQPNSPLWIKSSDGQKEVLNHEEYARICSSFIGSKPNGYVTEATRETGVVIINSLGLVETLMDADRWSEMFPSIIARAVTLDVISSGMGGSRSGALQVMQAEVQLPSPLVPVRQYSFLRFCKQHAEGVWVVADVSIDIGRNATNANALSCRKLPSGCVVQDMPNGFSKITWVDHSQYDENVVHQLYRPMVNSGIGFGAHRWVATLQRQCESFAIFMSSSPPSDDPTDMSQAGRRSMLKLAQRMSDYFWSGVCSSSACKWDILHFGTLGNNDMKIMSRKHLEGPGEAAGIVLSAATSVWMPVSRQRVFDFLREGRLRGEWDVLSNGGSMQEILHIAKGQGPGNCVSILRANNAANGNENNVLYLQDSWSDTSGSMIVYSPINMQSLTLVMNGGDSSYVTLLPSGFAILPDGNSNNSDLGTSSGSSGDGGGCLLTVGLQMLLSSLPTAKLTVESVDTVNALISCTLQKIKDALGVA* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00841 783 SUPERFAMILY Bet v1-like 548 777 - -
Rops5g00841 783 SUPERFAMILY Homeodomain-like 74 145 IPR009057 -
Rops5g00841 783 Gene3D - 75 161 - -
Rops5g00841 783 SUPERFAMILY Bet v1-like 290 521 - -
Rops5g00841 783 FunFam Homeobox-leucine zipper protein HDG1 74 161 - -
Rops5g00841 783 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 780 IPR042160 -
Rops5g00841 783 MobiDBLite consensus disorder prediction 60 95 - -
Rops5g00841 783 CDD START_ArGLABRA2_like 292 519 - -
Rops5g00841 783 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Rops5g00841 783 CDD homeodomain 88 145 IPR001356 GO:0003677
Rops5g00841 783 Pfam Homeodomain 88 143 IPR001356 GO:0003677
Rops5g00841 783 SMART START_1 297 520 IPR002913 GO:0008289
Rops5g00841 783 Pfam START domain 298 520 IPR002913 GO:0008289
Rops5g00841 783 Coils Coil 139 174 - -
Rops5g00841 783 ProSiteProfiles START domain profile. 288 523 IPR002913 GO:0008289
Rops5g00841 783 SMART HOX_1 87 149 IPR001356 GO:0003677
Rops5g00841 783 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00841 Rops-Chr5 16178321 16184623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00841 35 780 Homeobox Transcription Factor Family AT3G61150 54.856 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops5g00841 START 1.5e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00841 K09338 - gmx:100785102 1140.95