Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00839 ATGGGCTTTCTCCGGCGACTCTTCGGCGGCAAAAAACACCACAATCCTCCTCCTCCGGGTGTTCCTTCCGGGTCAAGTCAAAAACCCGGCAAGGGAAAACGGAGCTGGAGCTTCGCCAAACACAGCACAAGGGACAAGCTAAACTCACTCTCAACCCTCAACAACCAATTTGAACCTTCCAATGATTCCTTGGACGCCAATAAACATGCCATCGCCGTAGCCGCCGCTACCGCCGCCGTAGCCGAGGCTGCACTCGCCGCCGCCCATGCAGCCGCGGAGGTGGTCAGACTGACCAGCGGCAGCGGAGCAGCCAGTAGTGCCACCACCATGCCCGCCGCGGCTGCGAAAGTCATGCGAACGTCGGAGGAGGAAACCGCCGCCGCCGTTAAGATACAGTCGGCGTTCCGAGGTTACTTGGCTAGGAGGGCATTGAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGTAAGAAAGCAAACTGCAGATATGCTCAGGCGCATGCAAACACTGGTGAGACTGCAGTCCCGGGCACGTGCAAGTCGTGTGCATATGTCAGATAATATGCACTCTTTCAAGTCTTCACTTTCTCATTACCCAGCCCCTGATGATTATGAGCACTCGCTTCGTGCCTATAGTACAAAATTTGATGGATCCTCTATCCTCAAGAGATGTAGTTCCAATGCAAATTTTAGGGACATTGACTTAGAGAGGGCCCGGTTTGGTTCCAATTGGTCAGGCAATTGGATGGAAGAAAATGCATGGAGCCAAACTAGAAATGCTTCATTGAAACATGGGCACCCTGATGATGATAAAAGTGACAAAATTCTTGAAGTTGATACATGGAAGCCACACTTGAACTCACACCATAGTAGCAGCTCATTTCAGCCAGCAAATCATTATGTGTCTTCTGATTACAATAATGAGACTTTCATGACCTATGAGTCTCCATCAAAAGGTTCTTCTAAAGCTCCAAATCCAAGTATCTCTTCTAGGGAGGTGTTATCCCTAGGTGGCTCTCTGAAATATCACAAAGGAAAAGAAGAAGTAGCTTCAAGAACTGCTGAAAATAGTCCACAAGCATTTTCTTCCTCTTCTAGACTTGGAAGTGGTGCAAGGAGAGGTCCTTTTACACCAACTAAAAGTGAGTGTTCATGGGGTTTCTTCAGTGGCTACTCAGGTTATCCCAATTACATGGCAAATACTGAATCTTATAGAGCTAAGGTTAGGTCACAGAGTGCTCCAAGGCAAAGGTTGGAGTTTGAGAGATATGGTTCCACTAGAAGGTCTATTCAGGGTCTTTGGGAATCAGGGCCTAATTCAGATAGGGATTCTGATTGCAGGAGCAAGGCCTATTCAACCACAAGCAGCTTGAACATAATTGGGAGTACTAATTTAAGGTGA 1419 0.4792 MGFLRRLFGGKKHHNPPPPGVPSGSSQKPGKGKRSWSFAKHSTRDKLNSLSTLNNQFEPSNDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGSGAASSATTMPAAAAKVMRTSEEETAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARASRVHMSDNMHSFKSSLSHYPAPDDYEHSLRAYSTKFDGSSILKRCSSNANFRDIDLERARFGSNWSGNWMEENAWSQTRNASLKHGHPDDDKSDKILEVDTWKPHLNSHHSSSSFQPANHYVSSDYNNETFMTYESPSKGSSKAPNPSISSREVLSLGGSLKYHKGKEEVASRTAENSPQAFSSSSRLGSGARRGPFTPTKSECSWGFFSGYSGYPNYMANTESYRAKVRSQSAPRQRLEFERYGSTRRSIQGLWESGPNSDRDSDCRSKAYSTTSSLNIIGSTNLR* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00839 472 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Rops5g00839 472 SMART iq_5 146 167 IPR000048 GO:0005515
Rops5g00839 472 SMART iq_5 123 145 IPR000048 GO:0005515
Rops5g00839 472 Gene3D - 121 176 - -
Rops5g00839 472 MobiDBLite consensus disorder prediction 1 43 - -
Rops5g00839 472 Pfam IQ calmodulin-binding motif 125 145 IPR000048 GO:0005515
Rops5g00839 472 Pfam IQ calmodulin-binding motif 148 165 IPR000048 GO:0005515
Rops5g00839 472 MobiDBLite consensus disorder prediction 358 376 - -
Rops5g00839 472 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Rops5g00839 472 PANTHER IQ-DOMAIN 5-RELATED 31 444 - -
Rops5g00839 472 Pfam Protein of unknown function (DUF4005) 363 430 IPR025064 -
Rops5g00839 472 MobiDBLite consensus disorder prediction 350 382 - -
Rops5g00839 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 169 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00839 Rops-Chr5 16103246 16108613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00839 1 440 IQD Protein Family AT5G62070 44.766 6.06e-63 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00839 - - gmx:100785181 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00839 5 16103246 16108613 Rops5g00839 5 16103246 16108613 ECH
Rops5g00839 5 16103246 16108613 Rops6g02780 6 49941482 49946520 PCT