Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00813 ATGGACACATCATCACCGGTATTTGACAGCCCTTGTGGGGTGGCATTTTCCGATGAGGAGGTGCTGCTGGCGGCGAGGAACCCGAAGAAACGTGCAGGGAGGAAGAAGTTCAGGGAGACTCGTCACCCAGTGTATAGGGGAGTGAGGAGAAGGAACTCAGATAAATGGGTTTGTGAAGTGAGGGAACCCAACAAGAAGACTAGGATTTGGCTAGGGACTTTTCCCACGCCGGAGATGGCGGCGCGTGCTCATGATGTGGCAGCGATGGCGTTGAGGGGCCGCTATGCCTGTCTTAATTTTGCTGACTCGACATGGCGGCTCCCTGTCCCCGCCACCACCAAGGCCAAGGATATACAAAAGGCAGCAGTTTTGGCTGCCGAGGCTTTCAGACCAGATAAGACCTTAGAGACTAATGACATGAGGAATGAGATTGTCCCGGTGGCGGCCACCGTGGAAGAGCAAAGTGTACTTTATATGGAGGAGGAGGAAGAAGAAGAGAGAGTGTTGGGGATGCCAGAGTTGTTGAGGAATACGGTGCTTATGTCCCCAACACATTGTTTGAGTTTTGAGTATCAAGATCCTGACTTGGATGTTCAAGATGCTGAGGTGTCACTATGGAGTTTTTCAATTTAA 633 0.5118 MDTSSPVFDSPCGVAFSDEEVLLAARNPKKRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSTWRLPVPATTKAKDIQKAAVLAAEAFRPDKTLETNDMRNEIVPVAATVEEQSVLYMEEEEEEERVLGMPELLRNTVLMSPTHCLSFEYQDPDLDVQDAEVSLWSFSI* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00813 210 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Rops5g00813 210 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Rops5g00813 210 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Rops5g00813 210 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Rops5g00813 210 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Rops5g00813 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 208 IPR045277 GO:0003700
Rops5g00813 210 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Rops5g00813 210 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Rops5g00813 210 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Rops5g00813 210 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00813 Rops-Chr5 15400281 15401128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00813 8 208 AP2-EREBP Transcription Factor Family AT4G25470 54.286 2.13e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g00813 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00813 - - gmx:547622 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00813 5 15400281 15401128 Rops6g02802 6 50292576 50293422 ECH
Rops5g00813 5 15400281 15401128 Rops5g00813 5 15400281 15401128 ECH
Rops5g00813 5 15400281 15401128 Rops6g02802 6 50292576 50293422 PCT