Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00804 ATGGCCTCTGCAACACTGTTGCAATGTCACCTTCCATCTTTTTCTTCTTCTTCTTCTTCTTTTAGAATTCTGAAACCAACACTCTCACCTTTTCTAATTCACAACCCTCACCGTTCACGCTTCTCTCGTTTCACAACCACAACCACCCTCACCCCTCCACGTGCCTATGTTACTGGGCCCGCATCCGACCCGAATTTAATCGACCCGGATCCGAAGCTTGACGGGTCGGGTCCGGAGAAGACCAAGCCTCAGAGCGTCGTGACATGGGACCTACTCTCCATGCTCCTCATGAAGCATAAACTGCGCCTTGCTGTTTCGGTTGCATCACTCTTTGCCTGCACCACATGTACCCTATCCATGCCCATTTTCTCTGGGCGGTTTTTCGAAGTTCTTATTGGTGCTAGACCAGAGCCATTATGGAGGCTGCTCAGTAAAATTGGAATCCTGTATGCCCTGGAGCCACTTTTAACTGTTATTTTTGTTATAAACATGAACATAGTATGGGAGAAAGTTATGTCAACACTAAGAGCTCAGATTTTTGGAAGAATATTGATTCAGAAGATTGAGTTTTTTGACAAATACAAGGTTGGTGAACTCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAGATATTGTCAGTGAGAATGTTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTTGTTGGAACAATATTCATACTTTTTTCTTTGTCCCCTCAACTGGCACCAATTCTGGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTAAAGCACATGGGTTGGTCCAAGCATCTATGTCTGATTGTGTAACAGAAACATTTTCTGCTATTCGAACAGTAAGATCCTTCGGTGGAGAAAAGCGCCAAATGTTTACATTTGCTAACCAGGTTCTCTCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTAACTAGAGTTGCTGTTTATATTTCCTTAATTGCATTATATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTGAACTCTCTATTGGAACTATGGCATCATTCATTGGATATACTTTCACTTTAACATTTGCTGTTCAAGGACTGGTTAATACTTTCGGAGATCTTCGTGGAACTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTGTCTGGTGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCAGTGGAAGATGAAAACTATAAATTGTTCTCTAATAGTTTTGCTGAGAAAAACCAAAAAAGTTATTTTCATTACATGTCAGCACTAAAAACATCTAGCAGTTTGTTTAGTTTAGCTTGGAATGGAGATGTTTGTCTTGAAGATGTGTATTTCTCATATCCTTTAAGGCCAGATGTGGAAATCTTACGTGGTTTAAATTTAAGACTAAAATATGGAACTGTAACTGCACTTGTTGGTCCTAGTGGTGCTGGCAAAAGTACAGTAGTACAGCTATTGTCTCGTTTTTATGAGCCAGCAAGAGGTTGTATAACAGTTGGAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTTTCTATTGTAAATCAAGAGCCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATAGCATATGGGCTTCCAGATGAGGATGTTTCTAAAGACGATGTGATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTATGACACACTTGTTGGTGAGCGTGGAGGCCTACTGAGTGGAGGACAGAGACAGAGAATCGCTATTGCCCGAGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCCACCAGTGCCCTGGATGCTGTCAGTGAGCGCTTGGTTCAGGATGCACTCAACCATCTGATGAAGGGGAGGACAACATTAGTTATAGCTCACCGATTAAGCACAGTCCAAAATGCTTATCAAATTGCACTATGTTCTGATGGGAGGATTGCAGAACTAGGCACCCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACTCAAAGGCTTGCATTTGAATAA 2124 0.4214 MASATLLQCHLPSFSSSSSSFRILKPTLSPFLIHNPHRSRFSRFTTTTTLTPPRAYVTGPASDPNLIDPDPKLDGSGPEKTKPQSVVTWDLLSMLLMKHKLRLAVSVASLFACTTCTLSMPIFSGRFFEVLIGARPEPLWRLLSKIGILYALEPLLTVIFVINMNIVWEKVMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLGSLKDIVSENVSRDRGFRALSEVVGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGLVQASMSDCVTETFSAIRTVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSIGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSGVQVDDALAYGLERELKQKAVEDENYKLFSNSFAEKNQKSYFHYMSALKTSSSLFSLAWNGDVCLEDVYFSYPLRPDVEILRGLNLRLKYGTVTALVGPSGAGKSTVVQLLSRFYEPARGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAELGTHFELLAKKGQYASLVGTQRLAFE* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00804 707 Pfam ABC transporter 481 632 IPR003439 GO:0005524
Rops5g00804 707 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 68 705 IPR039421 -
Rops5g00804 707 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 461 705 - -
Rops5g00804 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 463 701 IPR003439 GO:0005524
Rops5g00804 707 Gene3D ABC transporter type 1, transmembrane domain 76 401 IPR036640 GO:0005524|GO:0016020
Rops5g00804 707 CDD ABC_MTABC3_MDL1_MDL2 465 702 - -
Rops5g00804 707 Gene3D - 461 704 IPR027417 -
Rops5g00804 707 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 104 387 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g00804 707 FunFam ABC transporter B family member 28 80 403 - -
Rops5g00804 707 CDD ABC_6TM_TAP_ABCB8_10_like 109 395 - -
Rops5g00804 707 SUPERFAMILY ABC transporter transmembrane region 92 395 IPR036640 GO:0005524|GO:0016020
Rops5g00804 707 ProSitePatterns ABC transporters family signature. 604 618 IPR017871 GO:0005524|GO:0016887
Rops5g00804 707 MobiDBLite consensus disorder prediction 54 82 - -
Rops5g00804 707 SMART AAA_5 490 684 IPR003593 GO:0016887
Rops5g00804 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 702 IPR027417 -
Rops5g00804 707 Pfam ABC transporter transmembrane region 105 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00804 Rops-Chr5 15300882 15307585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00804 461 707 Calmodulin-binding Proteins AT2G36910 54.800 2.10e-73 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00804 K05657 - gmx:100791034 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00804 5 15300882 15307585 Rops5g00804 5 15300882 15307585 ECH