Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00802 ATGGCCTCTGCAACAGTGTTGCAATGTCACCTTCCATCTTTTTCTTCTTCTTTTAGAATTCTGAAACCAACACTCTCACTCTCTCTCTCTCTCACCTTTTCTAATTCACAACCCTCACAGATCACGCTTCTCTCGTTTCACAACTACAACCTCCACGTGCCTATGTTACCGGACCCGAATCTAATCGACCCGGATCCGAAGGTTTACGGGTCGGGTCCCGAGAAGACTAAGCCACAGAGCGTCGTGACATGGGACCTACTCTCCGTGCTTCTCATGAAGCATAAACTGCGCCTTGCTGTTTCGGTTGCATCACTTTTTGCCTGCACCACATGTACCCTATCCATGCCCATTTTCTCTGGGCAGTTTTTTGAAGTTCTTATTGGTGCTAGATCAGAGCCATTATGGAGGCTGCTCAGTAAAATTGGAATCCTGTATGCCCTGGAGCCACTTTTAACTGTTATTTTTGTTATTAACATGAACATAGTATGGGAGAAAGTTATGTCAACACTGAGAGCTCAGATCTTTGGAAGAATATTGATTCAGAAGATTGAGTTTTTTGACAAATACAAGGTTGGTGAACTCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAGATATTGTCAGTGAAAATGTTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGTTCGGTGCCAAACGATTTTCTGCAACAGTGCTCAGCGTCCATAATTATCAAGCTGTTGTTGGAACAATATTCATACTTTTTTCTTTATCCCCTCAACTGGCACCGATTCTGGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTAAAGCACATGGGTTGGTCCAAGCATCTATGTCTGATTGTGTAAGATCCTTCGGTGGAGAAAAGCGCCAAATGTTTACATTTGCTAACCAGGTTCTCTCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTAACTAGAGTTGCTGTTTATATTTCCTTATTTGCATTATATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTGAACTCTCTATTGGAACTATGGCATCATTCATTGGATATACTTTCACTTTAACATTTGCTGTTCAAGGACTGGTTAATACTTTCGGAGATCTTCGTGGAACTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTGTCTGGAGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCAGTGGAAGATGAAAACTATAAATTGTTCTCTAATAGTTTTGCTGAGAAAAACCAAAAAAGTTATTTTCATTACATGTCAGCGCTAAAAACATCTAGCAGTTTGTTTAGTTTAGCTTGGAATGGAGATGTTTGTCTTGAAGATGTGTATTTCTCATATCCTTTAAGGCCAGATGTGGAAATCTTACGTGGCTTAAATTTGAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTCCTAGTGGTGCTGGCAAAAGTACAATAGTACAGCTATTGTCTCATTTTTACGAGCCAGCAAGAGGTTGTATAAAAGTTGGAGGAGAGGATGTCCGAACATTTGACAAGAGTGATTGGGCCCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTGCTGTTTTCAGTGTCTGTGGGAGAAAATATAGCATATGGGCTTCCAGATGAGGATGTTTCTAAAGATGATGTGATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCCCAGGGCCATGACACACTTGTTGGTGAGCGTGGAGGCCTACGGAGTGGAGGACAGAGACAGAGAATTGCTATTGCCCGAGCTCTCCTAAAGAATGCTCCTATCCTTATACTTGATGAGGCCACCAGTGCCCTGGATGCTGTCAGTGAGCGCTTGGTCCAGGATGCTCTCAACCATTTGATGAAGGGGAGGACAACATTAGTTATAGCTCACCGATTAAGCACAGTCCAAAATGCTTATCAAATTGCACTATGTTCTGATGGGAGGATAGCAGAACTAGGCACCCATTTTCAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACTCAAAGGCTTGCATTTGAATAA 2133 0.421 MASATVLQCHLPSFSSSFRILKPTLSLSLSLTFSNSQPSQITLLSFHNYNLHVPMLPDPNLIDPDPKVYGSGPEKTKPQSVVTWDLLSVLLMKHKLRLAVSVASLFACTTCTLSMPIFSGQFFEVLIGARSEPLWRLLSKIGILYALEPLLTVIFVINMNIVWEKVMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLGSLKDIVSENVSRDRGFRALSEFGAKRFSATVLSVHNYQAVVGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGLVQASMSDCVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLFALYCLGGSKVKAGELSIGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSGVQVDDALAYGLERELKQKAVEDENYKLFSNSFAEKNQKSYFHYMSALKTSSSLFSLAWNGDVCLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTIVQLLSHFYEPARGCIKVGGEDVRTFDKSDWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKDDVIKAAKAANAHDFIISLPQGHDTLVGERGGLRSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAELGTHFQLLAKKGQYASLVGTQRLAFE* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00802 710 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 58 708 IPR039421 -
Rops5g00802 710 Pfam ABC transporter transmembrane region 235 377 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g00802 710 Pfam ABC transporter transmembrane region 100 213 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g00802 710 SMART AAA_5 493 687 IPR003593 GO:0016887
Rops5g00802 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 705 IPR027417 -
Rops5g00802 710 SUPERFAMILY ABC transporter transmembrane region 87 398 IPR036640 GO:0005524|GO:0016020
Rops5g00802 710 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 390 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g00802 710 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 464 708 - -
Rops5g00802 710 Pfam ABC transporter 484 635 IPR003439 GO:0005524
Rops5g00802 710 Gene3D ABC transporter type 1, transmembrane domain 71 404 IPR036640 GO:0005524|GO:0016020
Rops5g00802 710 Gene3D - 464 707 IPR027417 -
Rops5g00802 710 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 466 704 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00802 Rops-Chr5 15279646 15286475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00802 464 710 Calmodulin-binding Proteins AT2G36910 53.200 1.93e-70 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00802 K05657 - gmx:100791034 1088.56