Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00792 ATGGACGTAGACGGAGGCAACAAGCGTGTCTACCACCGTCTTGGTGGGCCCGGGAGTGACACGAGGAATCAGAAAGTGTGCTTTCATTGGCAAGCTGGAAAGTGCAATCGTTACCCTTGTCATTTTCTTCATAGTGAATTGCCTCCTTCTAATGTTAATGGAACTTCTTCAAAGAGACCACATGATAATTCGGGCTTTTCAGGCCCACGCCGGGGCTCGAATTTCAACACTTGGGGTCGTGGCGGTGGCCGTGGTGGTGGTGGAGTAGGTGGTAGGGGAGTAGTTATGAAGGCTGATAGAGTTTGTAATTATTGGGTTCAAGGGAATTGTGGTTATGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAGTTTAGGTGAAGGGTTTTCTTTATTGACACAGCTTGAAGGGCATCAGAAGGTTGTGAGTGGGATTGCCATGCCCTCTGGTTCGGATAAGCTTTATACTGGAAGTACGGATCAGACTGTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTGTAGCTGTGATCACACTTGGTGGTGAAGTAGGTTGTATGATGAGTGAAGGTCCCTGGGTTTTTGTTGGCATACCCAATTTTGTTAAGGCCTGGAACACACAAAATTCGATGGAGCTAAGTCTAGATGGCCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTGTTTGCTGGTACACAGGATGGATCTATATTGGTATGGAAGTTTAATGTAGTCACCAACTGCTTTGAGCCGGCGGCATCACTTAAAGGTCATACCCGTGGTGTTGTTTCATTAGTTGTCGGAGCTAATAGACTTTACTCTGGTTCAATGGACAATACAATAAGAGTCTGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTATGCTGGGATCAATTCCTATTATCTTGTTCATTGGACAAAACAGTGAAGGTGTGGTTTGCTACAGAAAGTGGTAACTTGGAAGTGACATATACTCACAATGAAGAAAATGGTGTAGTTACCCTTTGTGGGATGCATGATTCACAAGGCAAGCCCATATTGCTGTGCTCTTGCAATGATAACACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTCACAAAACAAGAGGCACGGGCAATTCAAATAGGTCCTGGTGGCATATTCTTCACCGGTGATGGAACTGGTCAAGTGAGAGTGTGGAATTGGATACCAGATCCACCAACTATCAGCCAATAA 1275 0.4502 MDVDGGNKRVYHRLGGPGSDTRNQKVCFHWQAGKCNRYPCHFLHSELPPSNVNGTSSKRPHDNSGFSGPRRGSNFNTWGRGGGRGGGGVGGRGVVMKADRVCNYWVQGNCGYGERCKFLHSWSLGEGFSLLTQLEGHQKVVSGIAMPSGSDKLYTGSTDQTVRVWDCQSGKCVAVITLGGEVGCMMSEGPWVFVGIPNFVKAWNTQNSMELSLDGPVGQVYALVVNNDMLFAGTQDGSILVWKFNVVTNCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWFATESGNLEVTYTHNEENGVVTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFTKQEARAIQIGPGGIFFTGDGTGQVRVWNWIPDPPTISQ* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00792 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 166 - -
Rops5g00792 424 MobiDBLite consensus disorder prediction 50 89 - -
Rops5g00792 424 MobiDBLite consensus disorder prediction 50 74 - -
Rops5g00792 424 FunFam Zinc finger CCCH domain-containing protein 48 214 422 - -
Rops5g00792 424 Gene3D - 213 423 IPR015943 GO:0005515
Rops5g00792 424 SUPERFAMILY CCCH zinc finger 99 121 IPR036855 GO:0046872
Rops5g00792 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Rops5g00792 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
Rops5g00792 424 PANTHER - 99 419 IPR044715 -
Rops5g00792 424 SMART WD40_4 331 374 IPR001680 GO:0005515
Rops5g00792 424 SMART WD40_4 377 414 IPR001680 GO:0005515
Rops5g00792 424 SMART WD40_4 290 327 IPR001680 GO:0005515
Rops5g00792 424 SMART WD40_4 250 287 IPR001680 GO:0005515
Rops5g00792 424 SMART WD40_4 127 166 IPR001680 GO:0005515
Rops5g00792 424 SMART WD40_4 206 243 IPR001680 GO:0005515
Rops5g00792 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 290 - -
Rops5g00792 424 ProSiteProfiles Zinc finger C3H1-type profile. 96 123 IPR000571 GO:0046872
Rops5g00792 424 SMART c3hfinal6 98 122 IPR000571 GO:0046872
Rops5g00792 424 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Rops5g00792 424 SUPERFAMILY WD40 repeat-like 122 417 IPR036322 GO:0005515
Rops5g00792 424 PRINTS G protein beta WD-40 repeat signature 153 167 IPR020472 -
Rops5g00792 424 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Rops5g00792 424 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Rops5g00792 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 121 IPR000571 GO:0046872
Rops5g00792 424 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Rops5g00792 424 FunFam Zinc finger CCCH domain-containing protein 48 122 212 - -
Rops5g00792 424 Gene3D - 113 212 IPR015943 GO:0005515
Rops5g00792 424 Pfam WD domain, G-beta repeat 254 287 IPR001680 GO:0005515
Rops5g00792 424 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Rops5g00792 424 Pfam WD domain, G-beta repeat 130 166 IPR001680 GO:0005515
Rops5g00792 424 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00792 Rops-Chr5 15106636 15115592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00792 229 414 Miscellaneous Gene Families AT5G08390 26.768 2.84e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops5g00792 WD40 9.9e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00792 - - gmx:100775542 745.347