Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00774 ATGGAAGAAAACAAGAAGCTGATGCATAAGGAGATAGAAAGACAAAGAAGACAAGAGATGGGGAAAGTCTGCAACACCCTTAGATCTCTTCTGCCTTTGGAATATATCAAGATTAGAAATTTGAAAACCATTTGGGGTGCTTTTATTGCATATCTTGATGACCATCATCAGGGAAAACGCTCAACTTCTGATCATATGCATGAAGCTATGAATTATATCAACCACCTACAAGACAAGGTGAAGCAATTGCAAGCCAAGAGGGATGAGTTAACAAAAGTGTCTGGTTTGAGTACTATTGACCCTTATGAGAATGGAAGCTCAACAACCCATCTTCCACCCTTTGTTATTGTTCATCCTTGCCCTGGAGGCCTTGAGATTATGTGCAGCTACAGCTTCAAGAATTGTGTGTTTCCTTTGTCAAGAGTTCTAGACATGTTACTTAAAGAAGGGCTTAATGTGGTAAGCAGTACTTCCACCAGAATAAATGGCAGATTCATACACACTATACAATCAGAGGATCCTATTCATCCGAATATGACTGAAACTGATTACTCTGAACTGCAAAGAAAGCTTACCGAAGCAATATCATCTTCAAGTAATACTCTGCTATAG 612 0.3905 MEENKKLMHKEIERQRRQEMGKVCNTLRSLLPLEYIKIRNLKTIWGAFIAYLDDHHQGKRSTSDHMHEAMNYINHLQDKVKQLQAKRDELTKVSGLSTIDPYENGSSTTHLPPFVIVHPCPGGLEIMCSYSFKNCVFPLSRVLDMLLKEGLNVVSSTSTRINGRFIHTIQSEDPIHPNMTETDYSELQRKLTEAISSSSNTLL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00774 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 76 IPR011598 GO:0046983
Rops5g00774 203 Gene3D - 1 93 IPR036638 GO:0046983
Rops5g00774 203 Coils Coil 66 93 - -
Rops5g00774 203 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 194 - -
Rops5g00774 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 93 IPR036638 GO:0046983
Rops5g00774 203 SMART finulus 10 82 IPR011598 GO:0046983
Rops5g00774 203 Pfam Helix-loop-helix DNA-binding domain 5 77 IPR011598 GO:0046983
Rops5g00774 203 CDD bHLH_AtORG2_like 5 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00774 Rops-Chr5 14449163 14450125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00774 9 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.237 1.40e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops5g00774 HLH 3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00774 - - ccaj:109791323 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00774 5 14449163 14450125 Rops5g00774 5 14449163 14450125 ECH
Rops5g00774 5 14449163 14450125 Rops6g02823 6 50660324 50661967 PCT