Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00773 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCAAGTTTTCTAATAGTCCCCACCAGCAGCAACACAAGATCTCCGAAGATCAGATTCTGGATGATTATGCTTCTCTGGATGTCAATGATTCTGATAAAAAATCCATTAGTAGCCGCCCAAAGAAACTATTTTATGAGGCTGGTAAGAATCATAGTAATTCTAACTCTCATATGAAGAAGAAGATGGTCCACAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTACCTTTTATGTATCTCTTAGATCCCTTCTCCCTCTTGAATTTATCAAGGGAAAACGTTCAATGTCTGACCACATGAACGAGGCAGTGAATTACATCAAACACATGAAGAATAATATCAAAGAACTTAGTGCCAAGAGAGATGAACTGAAGAAATTCTCCAATTCCAAGATGGAAAACCATGAGACCAAGCATACATCTAGCAACTTTACTGTCCATGAGAATAATGGTATTGTGGGAATTGAAATCACCAGTGGCTTCACTGAGGAAAGGCTCAAACTTTCAGAGTTGTTACAATTACTACTTGAAGAAGGACTTGAAGTTGTTAGTTGCCTCTCAAACCAAGTCAATGGCAGATTGCTACACAGTATCCAGTGTGAGGTTAACAATTCCAACAATGTAGATCTATCAGATCTGAGAAGGAAAATTTCCTGTGTAACTCCAACATTTAGATGTTCTGATTAA 723 0.3859 MFPLQRGNELVIKFSNSPHQQQHKISEDQILDDYASLDVNDSDKKSISSRPKKLFYEAGKNHSNSNSHMKKKMVHREIERQRRQEMATFYVSLRSLLPLEFIKGKRSMSDHMNEAVNYIKHMKNNIKELSAKRDELKKFSNSKMENHETKHTSSNFTVHENNGIVGIEITSGFTEERLKLSELLQLLLEEGLEVVSCLSNQVNGRLLHSIQCEVNNSNNVDLSDLRRKISCVTPTFRCSD* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00773 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 137 IPR036638 GO:0046983
Rops5g00773 240 FunFam Transcription factor bHLH126 61 150 - -
Rops5g00773 240 Pfam Helix-loop-helix DNA-binding domain 71 122 IPR011598 GO:0046983
Rops5g00773 240 Gene3D - 61 155 IPR036638 GO:0046983
Rops5g00773 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 122 IPR011598 GO:0046983
Rops5g00773 240 SMART finulus 76 128 IPR011598 GO:0046983
Rops5g00773 240 Coils Coil 112 139 - -
Rops5g00773 240 CDD bHLH_AtORG2_like 71 138 - -
Rops5g00773 240 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 63 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00773 Rops-Chr5 14411863 14413245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00773 62 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 44.444 9.86e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops5g00773 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00773 - - gmx:100780888 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00773 5 14411863 14413245 Rops5g00773 5 14411863 14413245 ECH