Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00748 ATGGCAGTGCTCTCAAAAGTTAACAGACCCAATAACACAGCTATGGCTGCCTATAACATTCTCTTCTCCTTTATCCTTGCTAGCTTCCTTAGTTTTGCAACTACCGAGGCACTGGACACCCCTTTTTATTATTTATCCAAATATTGCTTCGACGACAATACCACTGCCAACAGCGGCTTCAAATTCGATCTCAGGATACTTCTCTCTTCATTTTCATCTGAGCACACCCAATTCTACGACACGAGAGTCATTGGAAAAGACCCCTCCTCCGACTCAGTCTATGGACTTGTCATGTGCAGGGATGATGTTCCCTCTCAGCTCTCAGAGCGACTATCCTCTGAGTGCCCCTTATCTGAACAAGCTGTGATTTGGTACGACGAGTGCATGATTCTGTACTCCAACTGCTCTTCCTTCTCCACGGTGGACACGGCCCCTACTTTACATCAATGCAGCAGCGCCAAAGTCTCAGACCCTGAAGGCTTCAAGCTTTTATTGTATTCGACAATGAACGAAACAGCAGATGAAGCTCCCAGTACTCCTATTGGTGAGAAGAAGTTTGCCACAAGGGAAGTAACTGTGTCAAGATTTGAGACCCTTTACTGTCTAGCTCAGTGCACACCCGACCTGTCACCTCACAATTGCAAAAAATGTCTCAGAAGAGCGATAGGGGGCAACTTTGTGCCAGGTGCAAGTGTATTTGCTGTTAGTAATGGTACAACAAAGGGTGGGTCCCCAAGAGCTAGAGTTGCAACCTACAAAGTGTGCTGGTCTCCAACGGATGCAGCCAGCTGTTACGGTGCTGATATGTTGGCTGCTATTGACCAAGCCACAAGTGATGGTGTTGATGTCATCTTTGTTTCTGCTGGAGGTTCAGTTGGTCTTACTCCTGAAGATATATTCGCAGATGAGGTTTCCATAGGGGCATTCCATGCACTTCAAAGAAATGTACTATTAGTTGTTTCTGCAGGGAATGATGGACCAACACTTGGAATTGTTGTCAATATGGCTCCTTGGGTATTCACGGTTGTTGCTAGCACCATAGATAGGGATGTCAACAGTACTATAACTTTGGCTAAGTATTGCCCTTTATTGCCTCCCCCTCGGTCTACTATTGCAACGGCATGCAGTCCAGATGGAAAAGTGCTTGCCTCCACACATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAATTGCTTAAAGGTGTTAGTTGGTCATAGAAGGACGCCTGGGGTGGTTAGGTCCCATCCATTGCATCGACAGATACTTGCTAAGCGGGAGCTTGGACCAAGAAGCCACAAGTTGTACATGTGGCACTACAACAATGGAGGTGAAGCATCCTCACCAGTATTTGTGTTGAAGACAAGGCGCTCACTCCGGGCCGTGCATTTTCACCCGCATGCTGCACCGACCTTGCTTTGA 1428 0.4671 MAVLSKVNRPNNTAMAAYNILFSFILASFLSFATTEALDTPFYYLSKYCFDDNTTANSGFKFDLRILLSSFSSEHTQFYDTRVIGKDPSSDSVYGLVMCRDDVPSQLSERLSSECPLSEQAVIWYDECMILYSNCSSFSTVDTAPTLHQCSSAKVSDPEGFKLLLYSTMNETADEAPSTPIGEKKFATREVTVSRFETLYCLAQCTPDLSPHNCKKCLRRAIGGNFVPGASVFAVSNGTTKGGSPRARVATYKVCWSPTDAASCYGADMLAAIDQATSDGVDVIFVSAGGSVGLTPEDIFADEVSIGAFHALQRNVLLVVSAGNDGPTLGIVVNMAPWVFTVVASTIDRDVNSTITLAKYCPLLPPPRSTIATACSPDGKVLASTHGDHTVKIIDCETGNCLKVLVGHRRTPGVVRSHPLHRQILAKRELGPRSHKLYMWHYNNGGEASSPVFVLKTRRSLRAVHFHPHAAPTLL* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00748 475 SUPERFAMILY Tricorn protease domain 2 362 468 - -
Rops5g00748 475 ProSiteProfiles Gnk2-homologous domain profile. 143 254 IPR002902 -
Rops5g00748 475 Gene3D - 348 359 - -
Rops5g00748 475 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 435 475 - -
Rops5g00748 475 SUPERFAMILY Subtilisin-like 230 361 IPR036852 GO:0004252|GO:0006508
Rops5g00748 475 Gene3D - 42 136 IPR038408 -
Rops5g00748 475 Pfam Salt stress response/antifungal 150 223 IPR002902 -
Rops5g00748 475 Pfam Salt stress response/antifungal 52 134 IPR002902 -
Rops5g00748 475 Pfam Subtilase family 238 348 IPR000209 GO:0006508|GO:0008236
Rops5g00748 475 Gene3D Peptidase S8/S53 domain 222 347 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00748 Rops-Chr5 13837289 13844547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00748 224 357 Subtilisin-like Serine Gene Family AT5G59810 55.224 7.17e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00748 - - lja:Lj0g3v0270179.1 230.335