Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00740 ATGTTGCAGAAAACAAAATTGAACCATAAGAAGAAGCAAAACAAGGAAGATAAGAATTCTGATCCAAACAAGCCTAAGAGACCTCCATCTGCATTCCTCTTATTCAGTAAAGAAGTAAGGAAGAGTTTACAGGAGGAAAATCCAGGAATCAGTACCTCCAGCCTTAATGCACTTGTTTCGTTGAAGTGGACGGAATTGTATTATGTAACCACTAATGATAATTGTGCTCCACTTGCATCAATTAGGCAATTTCTTCTCAAATCAGAATGGTACAAATTTGATGATGAGAGGGTGACAAAAGAAGACACTAAAAGGGCATTAGAGGAACAATATGGTGGTGAGGAAGAGTCTTTGCCTCACGACAGAGCCTTTAGGCTGTTATGGAAAAGCCTGGCCCCTCAGAAGGTGTTGGCCTTCTCCTGGCGGCTTTTCCTTGATAGGCTGCCCACTTGTGTAAATCCTAGGAAAAGGAACATTCTCCCTTCGTCCCACCGGGCCCTTTGTGTTTTTTGTGAAGCGGTTGAAGAAAAGGCTAATCATTTATTCTTTTCTTGTAGCTTTTCCTCTCAGGTTTGGTTCTATGCTCTCTCCTGGGTAGGTTTCAGTGTTATTTTGTAG 618 0.4175 MLQKTKLNHKKKQNKEDKNSDPNKPKRPPSAFLLFSKEVRKSLQEENPGISTSSLNALVSLKWTELYYVTTNDNCAPLASIRQFLLKSEWYKFDDERVTKEDTKRALEEQYGGEEESLPHDRAFRLLWKSLAPQKVLAFSWRLFLDRLPTCVNPRKRNILPSSHRALCVFCEAVEEKANHLFFSCSFSSQVWFYALSWVGFSVIL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00740 205 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 3 66 IPR044601 GO:0003677
Rops5g00740 205 Pfam HMG (high mobility group) box 25 66 IPR009071 -
Rops5g00740 205 SUPERFAMILY HMG-box 11 66 IPR036910 -
Rops5g00740 205 Gene3D High mobility group box domain 8 69 IPR036910 -
Rops5g00740 205 MobiDBLite consensus disorder prediction 10 24 - -
Rops5g00740 205 MobiDBLite consensus disorder prediction 1 30 - -
Rops5g00740 205 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 25 66 IPR009071 -
Rops5g00740 205 Pfam zinc-binding in reverse transcriptase 119 192 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00740 Rops-Chr5 13397144 13400663 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Rops5g00740 zf-RVT 7.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00740 K09273 - gmx:100783033 97.8265