Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00729 ATGCCTTCTCTTGTTCCTCTCTCCAACGGCGTCGTTCAGAGACAGAGCCCCAAAGACAAGACGAAGAAGAAGGACAAGAAGAACAAGAACCAAAACGACGCCGTTTCAGAAGTTCTGAGTTCGAAGAACAAGAGCAAGAAGCGAAAGAAGGATTGGGATGAGGAAGAAGAGGAAAATGAGAAGAGTGATACTAGCTCCGAACTCGTGGAGCCCACTGAGGAAGGTTCGAGAATGAAACCGAATAAGAAGAAGAAGAAAATGGAGTTTGAGGAGGAGGAAGAAGAAGAGGTTGAGAAGAAGGAGAATCCGAATGCGATTTCGAAGTTTAGGATTTCGGAACCGTTGAAGGCGAAGCTGAAGGAGAAGGGGATTGAAGCGTTGTTTCCTATTCAGGCTATGACCTTTAATACCGTTCTCGATGGTTCCGATTTGGTTGGTCGCGCTCGCACCGGTCAGGGTAAAACTCTGGCCTTTGTGTTACCCATATTAGAGTCTTTGACAAACGGTCCAGGTAAAGCGGCGAGAAAGATGGGCTATGGGCGGTCTCCAAGTGTCCTTGTGCTTTTACCTACCAGGGAATTGGCTAGTCAGGTGCATGATGATTTTGAAGTTTATGGTTCGGCAATGGGATTGGCTTCTTGCTGTTTATATGGTGGAGCTCCATATCATTCTCAAGAGATTAAACTCAAGAGAGGTGTTGATATTGTAGTTGGAACCCCTGGTCGCATAAAGGATCATATAGAGAGGGGGAATATTGACCTGAGCCAAGTAAGGTTCCGTGTCCTTGATGAGGCTGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTAGGTAAGGTAGAAGATGTTAATAAAGTTCAGACACTACTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATCTTTCTAGAAAATTTCTGAAATCAGCTAAGAAAACTGTTGATCTTGTTGGGAATGAAAAAATGAAGGCTAGCACCAATGTGAGGCATATTGTTCTTCCATGTAATAGTTCTGCTAGGTCCCAGCTTATCCCAGACGTTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTGCTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCTGGATTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATTCAGCAGTCACAGCGGGAGGTTACCTTGTCCGGTTTTAGGTCTGGGAAATTCCTGACATTGGTGGCCACAAATGTGGCAGCTAGAGGTCTGGATATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCACGGGATGTAGAAGCCTATATCCATCGATCTGGACGTACAGGAAGAGCTGGTAATACTGGGGTTGCTGTAATGCTTTATGATCCCAGAATATCAAATATATCTAAAATTGAAAGGGAAGTAGGTGTGAAATTTGAGCACATATCTGCTCCTAAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCCGAAATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAACAACTCAGGTTTATCAGCTGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGATAAAGAAAAGATCACTTCTGACTTCCATGGAGAATTATGTTACATTACTTCTTGAGAGTGGAAGACCTATCTTCACCCCATCCTTTGCATTTGGAATCCTGAGGAGATTCTTACCTGAGGAAAAGGTTGAGGCAGTGCAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCCGTTTTTGATGTTCCAGCCAAAGATCTAGATACATTTCTTACTGGTCAGAAGAATGCTGCTGGTGTAAGCCTAGAGGTGTTAAAAGAGTTGCCAAGTTTGCAAGAAAGAGAACAAAGAGGGGGCAGATTTGGTGGTGGTCGTGGTGGAAATAGGTTTTCAGGTGGAAGAGGTGGTGGCCGGAATGGTAGATTTTCAAGTCAGAACAATAGGTTTTCAAATGGCTTTAGCGGTGGGAGAGGTAATGGAGGCAGAGGGGGGAAAAGATGGTAA 2067 0.4461 MPSLVPLSNGVVQRQSPKDKTKKKDKKNKNQNDAVSEVLSSKNKSKKRKKDWDEEEEENEKSDTSSELVEPTEEGSRMKPNKKKKKMEFEEEEEEEVEKKENPNAISKFRISEPLKAKLKEKGIEALFPIQAMTFNTVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPGKAARKMGYGRSPSVLVLLPTRELASQVHDDFEVYGSAMGLASCCLYGGAPYHSQEIKLKRGVDIVVGTPGRIKDHIERGNIDLSQVRFRVLDEADEMLRMGFVEDVELILGKVEDVNKVQTLLFSATLPDWVKHLSRKFLKSAKKTVDLVGNEKMKASTNVRHIVLPCNSSARSQLIPDVIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRISNISKIEREVGVKFEHISAPKPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLESGRPIFTPSFAFGILRRFLPEEKVEAVQGLTLTADGNGAVFDVPAKDLDTFLTGQKNAAGVSLEVLKELPSLQEREQRGGRFGGGRGGNRFSGGRGGGRNGRFSSQNNRFSNGFSGGRGNGGRGGKRW* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00729 688 SMART helicmild6 372 449 IPR001650 -
Rops5g00729 688 MobiDBLite consensus disorder prediction 1 15 - -
Rops5g00729 688 FunFam DEAD-box ATP-dependent RNA helicase 7 555 627 - -
Rops5g00729 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 460 IPR027417 -
Rops5g00729 688 Pfam Helicase conserved C-terminal domain 354 449 IPR001650 -
Rops5g00729 688 MobiDBLite consensus disorder prediction 40 55 - -
Rops5g00729 688 Gene3D - 54 318 IPR027417 -
Rops5g00729 688 Gene3D - 327 556 IPR027417 -
Rops5g00729 688 Pfam GUCT (NUC152) domain 538 633 IPR012562 GO:0003723|GO:0004386|GO:0005524
Rops5g00729 688 SMART ultradead3 123 335 IPR014001 -
Rops5g00729 688 CDD SF2_C_DEAD 332 458 - -
Rops5g00729 688 Pfam DEAD/DEAH box helicase 128 305 IPR011545 GO:0003676|GO:0005524
Rops5g00729 688 MobiDBLite consensus disorder prediction 1 102 - -
Rops5g00729 688 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 495 IPR001650 -
Rops5g00729 688 Coils Coil 82 102 - -
Rops5g00729 688 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 261 269 IPR000629 -
Rops5g00729 688 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 317 IPR014001 -
Rops5g00729 688 MobiDBLite consensus disorder prediction 659 675 - -
Rops5g00729 688 Gene3D - 557 628 - -
Rops5g00729 688 SUPERFAMILY RNA-binding domain, RBD 542 625 IPR035979 GO:0003676
Rops5g00729 688 CDD DEADc 115 316 - -
Rops5g00729 688 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 51 517 - -
Rops5g00729 688 CDD GUCT_RH7_like 545 630 - -
Rops5g00729 688 MobiDBLite consensus disorder prediction 64 90 - -
Rops5g00729 688 MobiDBLite consensus disorder prediction 634 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00729 Rops-Chr5 12847674 12852973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00729 74 485 Eukaryotic Initiation Factors Gene Family AT1G72730 27.896 6.44e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00729 K16911 - cit:102628005 917.146