Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00711 ATGGTTCCACCACTTTGTGCTAATGGTTGTGGCTTCTACGGTTCTGCTGCAAACCACAACTTTTGTTCCAAGTGTTACAAAGATTATCTTAAAGAAAATACCACTAAATCAAATAACAAAAGCAAAAACTTGAAGGGTGAAACATGTGTTCTTGAGTCATCTCCTTCTCATGAACCATGTGATTATGAGAGCCCTATTATTGATGTATGTACTGGTTTTGCTGCTATTACTCTCACTGACCCCAAGAATGAGAAAAAGAGATGCAAGAGTTGCAACAAAAAAGTTGGACTAACAGGATTCGAGTGCAGTTGTGGGGATGTGTTTTGTGGAAAGCATAGGTACCCAGAAGTATGCATGTAA 360 0.3889 MVPPLCANGCGFYGSAANHNFCSKCYKDYLKENTTKSNNKSKNLKGETCVLESSPSHEPCDYESPIIDVCTGFAAITLTDPKNEKKRCKSCNKKVGLTGFECSCGDVFCGKHRYPEVCM* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00711 119 Gene3D - 73 118 IPR035896 -
Rops5g00711 119 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 116 - -
Rops5g00711 119 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Rops5g00711 119 Pfam A20-like zinc finger 5 27 IPR002653 GO:0003677|GO:0008270
Rops5g00711 119 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Rops5g00711 119 Gene3D - 1 48 - -
Rops5g00711 119 ProSiteProfiles Zinc finger AN1-type profile. 82 119 IPR000058 GO:0008270
Rops5g00711 119 SUPERFAMILY AN1-like Zinc finger 78 116 IPR035896 -
Rops5g00711 119 SMART AN1_Zf_4 88 118 IPR000058 GO:0008270
Rops5g00711 119 Pfam AN1-like Zinc finger 88 116 IPR000058 GO:0008270
Rops5g00711 119 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00711 Rops-Chr5 12525200 12525559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00711 5 117 C2H2 Transcription Factor Family AT3G52800 36.508 1.37e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00711 - - gmx:102666624 140.969