Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00710 ATGGATCCATCACTCTGTGCTAATGGTTGTGGTTTCTATGGTTCTGCTGCAAACAAGAACCTTTGTTCAAAGTGTTACAATGATTATCTCAAAGAAAACATTACTAAATCATATGATGAAGGTCTGAAGATTGAATCCAAGAACTTAAAGGATGAAACTTTGGTTCTTGAATCATCTACTTTTTCAAAGAATCCTGTTGCTGAAGTTTGTGATGATATGGCTGATGTTTCTCTCACTGAATCTGAGAACATGAAGAACAAGAAAAAAAGGTGCAAGAGTTGCAACAAAAAGGTTGGACTAATAGGATTCAATTGCCGTTGTGGGGATGTTTTTTGTGGAAGGCATAGATACCCAGAAACGCATGCATGTGAAAAGGATTTAAAGGAGATTGGTCGCCAAGCTTTGGCTAAACAAAATCCTTTAATTAACAGTGATAAGTTAGAATACAGGATCTAA 456 0.3618 MDPSLCANGCGFYGSAANKNLCSKCYNDYLKENITKSYDEGLKIESKNLKDETLVLESSTFSKNPVAEVCDDMADVSLTESENMKNKKKRCKSCNKKVGLIGFNCRCGDVFCGRHRYPETHACEKDLKEIGRQALAKQNPLINSDKLEYRI* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00710 151 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Rops5g00710 151 FunFam Zinc finger AN1-type containing 6 65 146 - -
Rops5g00710 151 Pfam AN1-like Zinc finger 91 126 IPR000058 GO:0008270
Rops5g00710 151 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 148 - -
Rops5g00710 151 Gene3D - 1 50 - -
Rops5g00710 151 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 55 - -
Rops5g00710 151 Gene3D - 67 146 IPR035896 -
Rops5g00710 151 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Rops5g00710 151 ProSiteProfiles Zinc finger AN1-type profile. 85 131 IPR000058 GO:0008270
Rops5g00710 151 SMART AN1_Zf_4 91 128 IPR000058 GO:0008270
Rops5g00710 151 SUPERFAMILY AN1-like Zinc finger 79 145 IPR035896 -
Rops5g00710 151 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00710 Rops-Chr5 12518613 12519068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00710 5 148 C2H2 Transcription Factor Family AT3G52800 41.558 7.75e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00710 - - gmx:102666624 191.045