Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00702 ATGGAGGAAAGAGAGATTTTTAGTTCTGGGGATGCTGTTAAGGTTAACGAGGCCCCAGAGAGCTTTCACGTGGCTCTAAATTCTGTGCAGTTTACGGGGCCCACAGCGGAGTCTCCGGCACCGGCTCCAGCTCCGGTGAATGCGCCGGCGGTGACTACCGGTAGTACGGAGGGAAAGAAGAAAAGGGGTAGGCCTAGGAAGTATGGACCGGACGGCAAGGTGGCGCTGTCGCCGATGCCGATATCGTCGTCGATTCCTTTGACCGGAGATTTCTCAGGCTGGAAAAAGGGTAGAGGGAAGCCTGTTGAACCAATCAAGAAGTCTTATAAGTTTTATGATTTTGAAGGTGGAGCAGGACCAGGTGATGGAATTGCATACTCAGTTGGTTCCAATTTCACTGCTCACGTGCTTACAGTAAATGGTGGCGAGGATGTTACTATGAAGATTATGTCTTTCTCTCAACAAGGATGCCATGCGATATGCATTCTCTCTGCAAATGGCACAATTTCAAATGTTACCCTTCGTCAACCGACTTCTTGTGGTGGTACTTCGACATATGAGGGAAGGTTTGAGATTCTTTCCTTGTGTGGTTCCTTTATGCCAACTGATAATGGATTTACAAGGAGTAGATCGGGTGGAATGAGCGTCTCTTTGGCAGGTCCAGATGGTCGAGTTATGGGGGGTGGACTGGCTGGTTTGCTCGTAGCTGCAGGTCCAGTGCAGGTTGTGGTAGGCAGTTTTCTTCCTGGTCACCAGCTGGAGCATAAATCCAAGAAGCAAAGGGTAGAGCATACATCACCAATTGTCCCTACTTCACATGTTAATCCTATTCCTGCTGAAGAAATACAAATCAGTCTTGGTGGAGTAAGGCCCATCATGACACCTGCTGGTTTTCAAGTGGACAACAACATTGCTCCTTTCAACAATGGTCAAGGCCCTAGGAACTCATCTGCTAATGATGAGGCCCCTTTATTTGAAAAGGAGTCTAACCCCACCAACCAATCAGATGCTGGAGTTGCATGCTAA 1026 0.4825 MEEREIFSSGDAVKVNEAPESFHVALNSVQFTGPTAESPAPAPAPVNAPAVTTGSTEGKKKRGRPRKYGPDGKVALSPMPISSSIPLTGDFSGWKKGRGKPVEPIKKSYKFYDFEGGAGPGDGIAYSVGSNFTAHVLTVNGGEDVTMKIMSFSQQGCHAICILSANGTISNVTLRQPTSCGGTSTYEGRFEILSLCGSFMPTDNGFTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKSKKQRVEHTSPIVPTSHVNPIPAEEIQISLGGVRPIMTPAGFQVDNNIAPFNNGQGPRNSSANDEAPLFEKESNPTNQSDAGVAC* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00702 341 MobiDBLite consensus disorder prediction 32 72 - -
Rops5g00702 341 ProSiteProfiles PPC domain profile profile. 129 271 IPR005175 -
Rops5g00702 341 MobiDBLite consensus disorder prediction 254 274 - -
Rops5g00702 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 309 IPR039605 GO:0003680
Rops5g00702 341 Gene3D - 133 265 - -
Rops5g00702 341 CDD DUF296 135 247 IPR005175 -
Rops5g00702 341 MobiDBLite consensus disorder prediction 303 341 - -
Rops5g00702 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Rops5g00702 341 FunFam AT-hook motif nuclear-localized protein 1-like 134 265 - -
Rops5g00702 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00702 Rops-Chr5 12392631 12399257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00702 52 316 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 51.282 7.13e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00702 - - gmx:102667678 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00702 5 12392631 12399257 Rops6g01570 6 32675152 32680958 ECH
Rops5g00702 5 12392631 12399257 Rops5g00702 5 12392631 12399257 ECH
Rops5g00702 5 12392631 12399257 Rops6g01570 6 32675152 32680958 PCT