Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00690 ATGGCTTCCATTGCAGCTTCCACTGCAGCTGCTTCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACTTTGGTGGTGCCACCAGGTCAGCTCCATCTCCTTCTAACCCTGCCACCTTCAAAACTGTGGCTCTTTTCTCCAAAAAGAAGGCTGCACCACCAAAGCAGAAACCTGCTGCTGTTTCTCCTATCGACGATGAGCTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGAGGGTCTCTTGGACCGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTCCCCGGAGACTATGGTTATGACCCATTTGGTCTTAGCAAGAAGCCAGAGGACTTTGCCAAATATCAGGCATTTGAGTTGATTCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATTTGGAGCCAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGTGGTACGTTGAACTACTTCGGGAAACCCATCCCCATCAATCTTATTGTTGCTGTTGTTGCTGAGGTTGTCCTTTTGGGAGGTGCAGAATACTACAGAATTATTAATGGACTGGATTTTGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTTGCAAAGGATCCAGACCAGGCTGCACTGCTAAAGGTGAAGGAAATCAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTACTTCCAAGCTTATGTCACAGGAGAAGGTCCTGTTGAGAACTTGGCAAAACATCTCAGTGACCCTTTTGGCAACAACTTGCTCACTGTCCTTTCTGGCAATGCTGAGAGGGTTCCAACTCTGTGA 873 0.4834 MASIAASTAAASLGMSEMLGNPINFGGATRSAPSPSNPATFKTVALFSKKKAAPPKQKPAAVSPIDDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEVVLLGGAEYYRIINGLDFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLSGNAERVPTL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00690 290 SUPERFAMILY Chlorophyll a-b binding protein 71 280 - -
Rops5g00690 290 Gene3D Chlorophyll a/b binding protein domain 79 290 - -
Rops5g00690 290 FunFam Chlorophyll a-b binding protein, chloroplastic 79 290 - -
Rops5g00690 290 Pfam Chlorophyll A-B binding protein 92 253 IPR022796 -
Rops5g00690 290 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 35 279 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00690 Rops-Chr5 12226466 12228863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00690 11 290 Chloroplast and Mitochondria Gene Families AT4G10340 83.630 7.75e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00690 K08916 - cpap:110818730 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00690 5 12226466 12228863 Rops5g00690 5 12226466 12228863 ECH