Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00676 ATGGCCCTCAAGTCTGCTATGGAGCTTGGCATAGCTGACATAATTCACAACCACGGAAAACCCAAGACTCTTCCTGAATTGGCCTCAGCTTTGAAACTCCACCCCTCAAAATTCACTGAGGACAAGGAACTCACCCTGTTTGAAAGCGCGACAGGGGAGAGCTTCTGGGACTTTCTCAACAAAGATTCTGACACACTGAGCATGTTTCAAGATGCCATGGCAGCTGATTCCCATATGTTCAAGCTTGCCCTCAAAGAATGCAAGCATGTTTTTGAGGGTTTGGGTTCCTTAGTTGATGTGGGAGGTGGAACTGGAGGTGTCACAAAACTCATCCATGAAGCATTCCCTCACCTCAAATGCACTGTATTTCACCAACCACAGGTTGTGGCTAACTTGTCTGGAAACGAAAATTTGAACTTTGTTGGCGGAGATATGTTCAAATCCATCCCTCCTGCAGATGCAGTTTTACTCAAGTGGGTTCTGCATGACTGGAATGATGAACTCTCCTTGAAGATATTGAAGAACTGCAAGGAAGCTATTTCAGGCAGAGGGAAAGAAGGGAAGGTGATTATCATAGACATATCAATTGATGAAACAAGTGATGATCGCGAATTGACAGAGTTGCAATTGGACTATGACTTGGTGATGCTCACCATGTTCACATGCTTTTGGACCTGCAAGCTGTTCTATAAACAATGGAGGTTAGAAGTGCATTTGGCACTCCTCCATAGCTTAGAAGTGCAATCAGATGTTTAG 756 0.4444 MALKSAMELGIADIIHNHGKPKTLPELASALKLHPSKFTEDKELTLFESATGESFWDFLNKDSDTLSMFQDAMAADSHMFKLALKECKHVFEGLGSLVDVGGGTGGVTKLIHEAFPHLKCTVFHQPQVVANLSGNENLNFVGGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDETSDDRELTELQLDYDLVMLTMFTCFWTCKLFYKQWRLEVHLALLHSLEVQSDV* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00676 251 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 251 IPR016461 GO:0008168
Rops5g00676 251 Pfam Dimerisation domain 1 37 IPR012967 GO:0046983
Rops5g00676 251 Gene3D Vaccinia Virus protein VP39 17 234 IPR029063 -
Rops5g00676 251 Pfam O-methyltransferase domain 40 219 IPR001077 GO:0008171
Rops5g00676 251 PANTHER O-METHYLTRANSFERASE 46 218 IPR016461 GO:0008168
Rops5g00676 251 SUPERFAMILY "Winged helix" DNA-binding domain 1 38 IPR036390 -
Rops5g00676 251 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 40 224 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00676 Rops-Chr5 11748059 11750050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00676 47 218 Monolignol Biosynthesis Gene Families AT5G54160 37.209 2.76e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00676 K22588 - gmx:106795493 304.679