Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00673 ATGTGTGAGAGCTTTGCCCACCAAACAGCAAATTGGAAAAAGACCATTACCCATTATCACAACCTTCTCATTCCTTCAAAACCATCACACCCCAACAGAGAAAAGAGAGACCCTCAGAGACACCACCAAGTCCATGGTGGCCTAGAAGCCACAAAGAACATCACAAAGAAGCACTATAGAGAGGTGAGGCGTCGTCCTTGGGGAAAATATACAGCGGAGATTCGTGACTCAGCACGTCATGGAGCAAGGATATGGCTTGGCACGTTCCAAACAGCTGAAGAAGCTGCCATGGCTTATGATAAAGCTGCTTTCAAGATGAGGGGTGCTAAGGCTTTGCTCAATTTCCCAGCTGAAGTTGTTGCTACAGCTTCTATTCAGATGGATTTGTCTTCTAAGAATGATTTGAATAATCATGATTCTGATTCAAGTGCTAGTAGTTCTTGCACCAATTCCACTTCAACTGGGGTTAATAGGTCTCAGTTTGAAAGCACAAGTAGCACAGGTGACTAG 510 0.4451 MCESFAHQTANWKKTITHYHNLLIPSKPSHPNREKRDPQRHHQVHGGLEATKNITKKHYREVRRRPWGKYTAEIRDSARHGARIWLGTFQTAEEAAMAYDKAAFKMRGAKALLNFPAEVVATASIQMDLSSKNDLNNHDSDSSASSSCTNSTSTGVNRSQFESTSSTGD* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00673 169 Gene3D AP2/ERF domain 57 118 IPR036955 GO:0003700|GO:0006355
Rops5g00673 169 PANTHER DNA-BINDING DOMAIN 39 148 IPR044808 GO:0003700|GO:0009873
Rops5g00673 169 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Rops5g00673 169 SUPERFAMILY DNA-binding domain 58 118 IPR016177 GO:0003677
Rops5g00673 169 CDD AP2 57 117 IPR001471 GO:0003700|GO:0006355
Rops5g00673 169 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Rops5g00673 169 MobiDBLite consensus disorder prediction 24 57 - -
Rops5g00673 169 MobiDBLite consensus disorder prediction 132 169 - -
Rops5g00673 169 FunFam Ethylene-responsive transcription factor 2 57 118 - -
Rops5g00673 169 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Rops5g00673 169 MobiDBLite consensus disorder prediction 29 56 - -
Rops5g00673 169 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Rops5g00673 169 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00673 Rops-Chr5 11501097 11501705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00673 57 119 AP2-EREBP Transcription Factor Family AT4G17500 73.016 3.25e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops5g00673 AP2 7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00673 K13433 - gmx:100811533 153.68