Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00672 ATGACTATATCATCTACATACACCACCAAGACCATTACCCATTATCACAACCTTCTCATTCCTTCAAAACCATCACACCCCAACAGAGAAAAGAGAGACCCTCAGAGACACCACCAAGTCCATGGTGGCCTAGAAGCCACAAAGAACATCACAAAGAAGCACTATAGAGAGGTGAGGCGTCGTCCTTGGGGAAAATATGCAGCGGAGATTCGTGACTCAGCACGTCATGGAGCAAGGATATGGCTTGGCACGTTCCAAACAGCTGAAGAAGCTGCCATGGCTTATGATAAAGCTGCTTTCAAGATGAGGGGTGCTAAGGCTTTGCTCAATTTCCCAGCTGAAGTTGTTGCTGCAGCTTCTATTCAGATGGATTTGTCTTCTAAGAATGATTTGAATAATCATGATTCTGATTCAAGTGCTAGTAGTTCTTGCACCAATTCCACTTCAACTGGGGTTAATAGGTCTCAGTTTGAAAGCACAAGTAGCACAGGTGACTAG 498 0.4458 MTISSTYTTKTITHYHNLLIPSKPSHPNREKRDPQRHHQVHGGLEATKNITKKHYREVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDKAAFKMRGAKALLNFPAEVVAAASIQMDLSSKNDLNNHDSDSSASSSCTNSTSTGVNRSQFESTSSTGD* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00672 165 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Rops5g00672 165 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Rops5g00672 165 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Rops5g00672 165 FunFam Ethylene-responsive transcription factor 2 53 114 - -
Rops5g00672 165 MobiDBLite consensus disorder prediction 25 48 - -
Rops5g00672 165 MobiDBLite consensus disorder prediction 129 165 - -
Rops5g00672 165 Gene3D AP2/ERF domain 53 114 IPR036955 GO:0003700|GO:0006355
Rops5g00672 165 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Rops5g00672 165 SUPERFAMILY DNA-binding domain 54 114 IPR016177 GO:0003677
Rops5g00672 165 PANTHER DNA-BINDING DOMAIN 37 144 IPR044808 GO:0003700|GO:0009873
Rops5g00672 165 MobiDBLite consensus disorder prediction 19 48 - -
Rops5g00672 165 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Rops5g00672 165 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00672 Rops-Chr5 11481230 11484826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00672 50 128 AP2-EREBP Transcription Factor Family AT5G47220 62.025 3.23e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g00672 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00672 K13433 - gmx:100811533 156.762