Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00655 ATGCATCATTGGAACAACCAACGAAAACGTCAGTTTGTTTTTATTATTACACATATAACCATCCGTTCCATTTCATTTCTCTCACTTTCTCAGTTCCTCCAACATCGTTCCCAGGCAAAGTATGCCTTTGAAGGAATCAACAATATCCAGTACTCTATATCAGATTCCATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCGTTTTGGATCTATATTCAACAAGTTGATCAAGGAGCTTGGGGAACCTGTTGACTTTGAACTTCCAGATTGGCTTCTTAAGTCCAAGTCAACACAGTACACCCATATAAAACGCAATATATATCTCGCTAAGAAGGTCAAGAGACGGATTGATGATGATGGCATATTCTGTTCCTGTACACCTTCACCTGAATCTACTGGTGTGTGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGCTGTAAATGTGGGAGCTCCTGTCTTAACAAACCATTTCATCATCGTCCTGTGAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCCGGAATTGTGGCAGATGAAGACATCAAGCTTGGGGAGTTTGTTATTGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGACTTTGGAATATGAAACATCGTGGGGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATTTGACCTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTGCTGGGTGTAGGCGTAAGCTGGGTGTACGACCTACCAAGCCTAAAATGTCTTCAGATGCCGCATTAAAATTAGTTGCATATCAGGTTTGTCAGAATGGAGGCTTGCAAATTGGAAGTTCTCGTGTTGTTGACCAATCAAAGTGCTTACACAATTGCATTGGTGAAGTTATTAGGATAAAACAACTTGGAAATGTGAGGTTTGGGATTATTAAACGGTTTGATAAATATTCCCGGAAACACTCGATCATGTTTGAGGATGGTTGTGTTGAAATTTTTGACATGTCAAAAGAAGATTGGGAACTTCCTGACTTGGTGCTTGCCAAGTTAGAAAATGAGGAACGTAAGATTGCCAATTCTTGTGTTGTTCAGGTGTAA 1278 0.3944 MHHWNNQRKRQFVFIITHITIRSISFLSLSQFLQHRSQAKYAFEGINNIQYSISDSMPAMKKNSEQTRFGSIFNKLIKELGEPVDFELPDWLLKSKSTQYTHIKRNIYLAKKVKRRIDDDGIFCSCTPSPESTGVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFHHRPVKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAGCRRKLGVRPTKPKMSSDAALKLVAYQVCQNGGLQIGSSRVVDQSKCLHNCIGEVIRIKQLGNVRFGIIKRFDKYSRKHSIMFEDGCVEIFDMSKEDWELPDLVLAKLENEERKIANSCVVQV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00655 425 CDD SET_ASHR3-like 171 309 - -
Rops5g00655 425 ProSiteProfiles AWS domain profile. 119 168 IPR006560 GO:0005634|GO:0042054
Rops5g00655 425 SMART shorttest3 119 169 IPR006560 GO:0005634|GO:0042054
Rops5g00655 425 SUPERFAMILY SET domain 97 305 IPR046341 -
Rops5g00655 425 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 94 347 IPR025787 -
Rops5g00655 425 SMART set_7 170 293 IPR001214 GO:0005515
Rops5g00655 425 Gene3D SET domain 92 325 IPR046341 -
Rops5g00655 425 SMART PostSET_3 293 309 IPR003616 -
Rops5g00655 425 ProSiteProfiles Post-SET domain profile. 293 309 IPR003616 -
Rops5g00655 425 ProSiteProfiles SET domain profile. 170 287 IPR001214 GO:0005515
Rops5g00655 425 PANTHER SET DOMAIN PROTEINS 82 332 - -
Rops5g00655 425 FunFam Histone-lysine N-methyltransferase 86 325 - -
Rops5g00655 425 Pfam SET domain 181 286 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00655 Rops-Chr5 11164610 11176761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00655 143 305 C2H2 Transcription Factor Family AT2G23740 33.880 1.09e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops5g00655 SET 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00655 - - gmx:100808183 662.144