Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00640 ATGGAATCTAGTAGCATTGATAGCATTGTATTGTCTTTGACTATGATGGAAGAGGATGAGCATCCTCATCAGTTTTCTTCAATCTCGAAGCTTCATAACAATGCTCCCACCACTATAAGTGTCCATGACCTTCTTGAATGCCCCGTTTGTACCGACTCAATGTACCCTCTAATTCATCAGCGCCACAATGGGCATACTCTTTGTTCAACTGGTAAGACTAGGGTACACAACCCCTGCCCAACTGGCAGGCAGGAACTGGGTGATATAAGGTGTCTAGCATTGGAGAAGATAGCAGAATCACTTGAACTGCCATGCAGATATGTCTCTCTTGGGTGTCCAGAGATATTTCCTTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAAATCATACAACTGCCCTTATGCTGGGTCAGACTGCTCTATTGTTGGGGATGTTCCATACCTTGTTGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCACCGATATGTAAAGTCTAATCCAATGGAAGTAGAAAATGCTACGTGGATGCTAACAATTTTCCATTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAAGCTTTCCAGCTTGGTATGGCTCCTGTTTACATGGCATTTCTCCGATTCATGGGTGATGAAAGAGAGGCCAGGAACTACAGCTGCAGCTTGGAGGTGGGAGGAAGTAGACGCAAACTAACTTTTGAAGGGAGTCCAAGAAGTATCAGAGATAGCCATAAGAAAGTCAGAGACAGTCATGATGGCCTCATCATATACCGTAACATGGCACTATTCTTCTCAGGTGGGGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGCTATGGAAAGAACAGCAGAACCTTGAAGGTGGAGTCTGTATACTTTACCTGTGTACCTAG 930 0.4355 MESSSIDSIVLSLTMMEEDEHPHQFSSISKLHNNAPTTISVHDLLECPVCTDSMYPLIHQRHNGHTLCSTGKTRVHNPCPTGRQELGDIRCLALEKIAESLELPCRYVSLGCPEIFPYYSKLKHEAICNFKSYNCPYAGSDCSIVGDVPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTIFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSCSLEVGGSRRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRLWKEQQNLEGGVCILYLCT* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00640 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 155 IPR013083 -
Rops5g00640 309 FunFam E3 ubiquitin-protein ligase SINAT3 97 155 - -
Rops5g00640 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 156 288 - -
Rops5g00640 309 CDD Sina 161 289 - -
Rops5g00640 309 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Rops5g00640 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 162 288 IPR008974 GO:0005515
Rops5g00640 309 Pfam Seven in absentia protein family 89 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops5g00640 309 SUPERFAMILY TRAF domain-like 100 291 - -
Rops5g00640 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 30 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00640 Rops-Chr5 10985320 10986249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00640 3 295 C3H Transcription Factor Family AT2G41980 68.814 1.34e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00640 K04506 - gmx:100792687 592.423