Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00633 ATGGTGATTTTTAACTCAATTCTAGTTCAAGAGCTGCAACTTTTAATGAGTGTTCCTATGACACCAGAAAGTGAAGTTACTGAGAAAATGGATAAAGAAGATAATGTAAACCATGGTGATAATCTGCATGACACAGAAAATGATGGTCGATTGGATGGGAATGAGGAAATTGGAAGGTATTGGTCAGAGTTTTCTGAAAGAAACATGACATATGCAGAGCCACTTCTTGTGAAGAGGACTAACACTACCTCCCAGATTGCTTTAGTTGGTTCCAATCTCTGCCCTATTGAAAGCCTTGACTATGAGATTTTTGACAATGAAATATTTAATCAGGACTGGAGGTCCAGGAAGAAGGTTCAGATATTCCAGTATGTGATACTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGGACTGGATTGGTTGGCTTCTTTAATAATCTTGCGGTTGAGAACATAGCTGGTTTCAAGCTGCTTTTGACAACCAGTCTCATGTCTAAACAAAGATATCTTGAGGCTTTTCTAGCATATGCTGGTCTCAATATAGTTTTAGCAGCAGCTGCAGCAGCACTTTGTGCTTTCATTGCTCCATCAGCAGCAGGATCTGGCATTCCAGAGGTGAAAGCATATCTCAATGGAATTGATGCTCACTCTATACTGGCTCCAAGCACCCTTTTTGTAAAGATTGTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAAGGACCTATGGTTCATACAGGTGCATGCATAGCTTCTTTGTTGGGGCAGGGTGGATCTCGCAAGTATCATTTGACTTGTACTTGGCTTAGATATTTCAAAAATGACAGGGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCTTTTCGTGCTCCAGTAGGCGGTGTCCTCTTTGCTCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCTCTTCTATGGAGGACATTTTTCACTACAGCTGTAGTTGCTATTGTTATAAGAGCTGGAATTCAGTTTTGTTCCACAGGGAAATGTGGACTATTTGGGGAAGGTGGTCTTATAATGTATGATGTCAGTTCAGCCAAGGTAACATATAGTGGTGGTGATATAATAGCAGTAATAATCTTGGGAACCATTGCCGGTTTTCTTGGAAGCATGTATAATTTCCTCGTGGATAGGGTGGTCCGTACATATAGCATCGTCAATGAAAAAGGTGCTGCTTTCAAGATCTCTCTTGTTGTCACAATTGCTCTTTTGACATCATGTTGTTATTATTTCCTTCCATGGGTTGCAACCTGTATCCCTTGTCCTATTGATACGACAGTGAGCTGTCCCTCTGTTGATGAGTCAGGAGAATACAAAATCTTTCAATGTCCACCAGGCCACTACAATGATCTTGCCTCCCTTTTTCTAAACACCAATGATGATGCTATTCGGAATCTATTCAGTCCCAAGATAACCAAAGAATTTCACATTTCCAGTTTGTTTATCTTCTTTGCTACTGTTTACTGCCTTGGGATAATCACTTATGGTATTGCTATTCCATCTGGGCTTTTCATTCCTGTGATACTTGCTGGTTCTGCCTATGGCCGTCTTCTCGGGAGGCTCTTTGAACCAATCACCAAACTTGACACAGGACTCTTTGCCCTCCTTGGAGCTGCCTCCTTCCTTGGTGGTACCATGAGAATGACAGTTTCCATTTGTGTTATATTGCTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTGATCTCAAAAACTGTGGCTGATTGCTTCAACAAGGGTGTCTATGATCAAATACTGAAGATCAAAGGACTTCCTTATTTGGAGGCCTATGCAGAACCTTACATGAGGAATATAGTTACACGTGATGTTGTCTCAGGTCCATTAATAACCTTTTCTGGCGTTGAAAGGGTGGGTAATATATTACATGTTTTGAATACTACAGGGCATAATGGGTTTCCTGTTATTGATGAACCACCTTTCTCAGATTCACCTGAGTTGTGTGGGCTTGTACTGAAGTCTCATTTACTAGTTTTACTTAAGGCGAAGAACTTTACTAGAGGAAGGGTGTTCGCGGATGAGAGTATCTTTGAAAACATTTCTAAGTTAGATTTTGGAAAGGCAGGATCAGGTAAGGGAATCAAACTAGAGGATCTAGTTATACAAGAGGAAGAGATGGATATGTATGTTGATCTTCATCCCATAACTAATGCATCCCCTTACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCCATTATTTTCCGCCAACAAGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCTATTGTAGGGATTCTAACACGCCATGATTTTATGCCTGAGCATGTTTTGGGACTTCACCCCAATATCAAGCATCACAAATGGCACTGA 2442 0.4173 MVIFNSILVQELQLLMSVPMTPESEVTEKMDKEDNVNHGDNLHDTENDGRLDGNEEIGRYWSEFSERNMTYAEPLLVKRTNTTSQIALVGSNLCPIESLDYEIFDNEIFNQDWRSRKKVQIFQYVILKWGFALLIGLGTGLVGFFNNLAVENIAGFKLLLTTSLMSKQRYLEAFLAYAGLNIVLAAAAAALCAFIAPSAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIVGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVIRAGIQFCSTGKCGLFGEGGLIMYDVSSAKVTYSGGDIIAVIILGTIAGFLGSMYNFLVDRVVRTYSIVNEKGAAFKISLVVTIALLTSCCYYFLPWVATCIPCPIDTTVSCPSVDESGEYKIFQCPPGHYNDLASLFLNTNDDAIRNLFSPKITKEFHISSLFIFFATVYCLGIITYGIAIPSGLFIPVILAGSAYGRLLGRLFEPITKLDTGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLISKTVADCFNKGVYDQILKIKGLPYLEAYAEPYMRNIVTRDVVSGPLITFSGVERVGNILHVLNTTGHNGFPVIDEPPFSDSPELCGLVLKSHLLVLLKAKNFTRGRVFADESIFENISKLDFGKAGSGKGIKLEDLVIQEEEMDMYVDLHPITNASPYTVVETMSLAKAAIIFRQQGLRHMCVVPKSQGRPPIVGILTRHDFMPEHVLGLHPNIKHHKWH* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00633 813 SUPERFAMILY Clc chloride channel 107 620 IPR014743 -
Rops5g00633 813 CDD ClC_6_like 97 618 - -
Rops5g00633 813 Gene3D Clc chloride channel 120 618 - -
Rops5g00633 813 SMART cbs_1 749 800 IPR000644 -
Rops5g00633 813 SMART cbs_1 638 691 IPR000644 -
Rops5g00633 813 Pfam CBS domain 749 795 IPR000644 -
Rops5g00633 813 Gene3D - 619 801 IPR046342 -
Rops5g00633 813 PRINTS Chloride channel signature 292 311 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g00633 813 PRINTS Chloride channel signature 549 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g00633 813 PRINTS Chloride channel signature 228 247 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g00633 813 PRINTS Chloride channel signature 605 619 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g00633 813 PRINTS Chloride channel signature 567 586 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g00633 813 PRINTS Chloride channel signature 197 214 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g00633 813 PRINTS Chloride channel signature 517 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g00633 813 CDD CBS_pair_voltage-gated_CLC_euk_bac 632 798 - -
Rops5g00633 813 Pfam Voltage gated chloride channel 185 599 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g00633 813 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 56 802 - -
Rops5g00633 813 ProSiteProfiles CBS domain profile. 745 806 IPR000644 -
Rops5g00633 813 SUPERFAMILY CBS-domain pair 622 796 IPR046342 -
Rops5g00633 813 PRINTS Plant CLC chloride channel signature 313 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g00633 813 PRINTS Plant CLC chloride channel signature 102 110 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g00633 813 PRINTS Plant CLC chloride channel signature 327 337 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g00633 813 PRINTS Plant CLC chloride channel signature 469 485 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g00633 813 PRINTS Plant CLC chloride channel signature 345 352 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g00633 813 FunFam Chloride channel ClC3 120 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00633 Rops-Chr5 10735552 10743387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00633 34 811 Ion Channels AT5G49890 70.551 0.0 1096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00633 K05016 - gmx:100809070 1286.55