Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00632 ATGAAAAGCCAAACCCTAATCAACGTTTCTCTCGCTCTCTTTCTCTCTCTCTCTCCTATCGGGCAACCTCTTCTCTGGCACCGCCTTTATCTCCGCCGTGACCTTCCACACCTAAACGCCGCACCAGATCCTCAATTTGATTACCTGGGTCAAAGATTTCTGTCATTCTCAATCATGGCAACTAGACTTCAGTTTGAGAATTCTTGTGAAGTTGGAGTGTTCTCTAAACTCACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCTGAAAACTTCTACAGTGTATTTGAAGGTGAGTTAACAGATGTTATCCCTTTGGTCAAGACATCCATTGGTGGCAATCGTATTATTGGCCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTCTTGCCCCATACTACCACAGACCAAGAACTTCAACATTTGAGAAACTGTCTACCTGATCAAGTTGTTGTTCAGCGGATAGAAGAAAGATTATCTGCTCTGGGAAATTGTATAGCATGTAATGATCATGTGGCCCTCACTCACACTGATCTTGACAGGGAGACTGAGGAGATGATTGCAGATGTTCTTGGAGTGGAAGTTTTCAGGCAGACCATTGCTGGCAATCTTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGAGGTGGTTTGGTCCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACTGTGAACCGGGGTAGTGAAGTAGTAGCTGCTGGGATGACCGTTAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTCTCTGTAATTGAGAGTGTTTTCAAGCTGAGGGAAGCTCAGCCTAGTGCCATTGTGGATGAGATGAGGAAATCACTCATTGATAGCTATGTCTAA 912 0.4463 MKSQTLINVSLALFLSLSPIGQPLLWHRLYLRRDLPHLNAAPDPQFDYLGQRFLSFSIMATRLQFENSCEVGVFSKLTNAYCLVAIGGSENFYSVFEGELTDVIPLVKTSIGGNRIIGRLCAGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNLLVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVVAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00632 303 NCBIfam translation initiation factor IF-6 62 282 IPR002769 GO:0042256|GO:0043022
Rops5g00632 303 SUPERFAMILY Pentein 59 282 - -
Rops5g00632 303 SMART eIF6neu2 61 262 IPR002769 GO:0042256|GO:0043022
Rops5g00632 303 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 59 302 IPR002769 GO:0042256|GO:0043022
Rops5g00632 303 FunFam Eukaryotic translation initiation factor 6 59 283 - -
Rops5g00632 303 CDD IF6 60 281 IPR002769 GO:0042256|GO:0043022
Rops5g00632 303 Pfam eIF-6 family 62 261 IPR002769 GO:0042256|GO:0043022
Rops5g00632 303 Hamap Translation initiation factor 6 [eif6]. 48 303 IPR002769 GO:0042256|GO:0043022
Rops5g00632 303 Gene3D - 59 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00632 Rops-Chr5 10707947 10717210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00632 59 303 Eukaryotic Initiation Factors Gene Family AT3G55620 89.796 4.20e-169 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00632 K03264 - ming:122066887 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00632 5 10707947 10717210 Rops6g01599 6 32903117 32911352 PCT