Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00621 ATGAGAAACTCTGAAGCAACTCAGGTTTCAATGGAAATAGAAGCAAGCAAACCTGCAGGGAATGGAACAACAACCCTACCAGGGTTGAGTCCTTTGAGTGAGACCCTTTGGAGGGAAAAGGCCAACACTGAGATCATTGGAGATGTCTCAGCAAGGCTGACATGGAAGGATCTAACTGTTATGGTCACTCTTAGCAATGGAGAGACACAAAATGTTTTGGAAGGTCTAACTGGTTACGCTGAACCTGGAACCTTCACTGCTCTCATGGGTCCTTCAGGTTCAGGAAAATCTACTCTTCTTGATGCTCTTTCTAGTCGTTTAGCTTCCAATTGTTTCCTCTCAGGAACCATCCTCCTCAATGGTCGCAAAGCCAAGCTCTCTTTTGGCACTGCAGCTTATGTGACACAAGATGACAACTTGATTGGTACCTTAACAGTAAGAGAAACGATTTCATATTCAGCCCGTTTGCGTTTGCCTGATAAGATGTCAAGGTCAGATAAAAGAGCTTTGGTTGAGAGTACCATTGTTGCAATGGGTCTTCAAGATTGTGCTGACACAGTGATTGGGAACTGGCACTTGCGTGGGATAAGTGGAGGAGAAAAGAGAAGGGTTAGCATTGCCTTGGAAATCTTGATGAGGCCAAGGGTACTTTTCCTTGATGAACCAACTAGTGGACTTGACAGTGCTTCAGCTTTCTTTGTGACTCAGACACTACGTGCCTTGGCAAGGGATGGAAGAACAGTGATAGCTTCTATTCATCAACCTAGTAGTGAAGTGTTTGAACTATTTGATCAATTGTACTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGCCAAGCTTCAGAAGCATATGAGTTCTTTGCACAAGCTGGTTTTCCATGCCCTGCTCTGAGGAACCCTTCTGATCATTTCCTTAGGTGCATCAATTCTGACTTTGACAAAGTCAAAGCCACTCTTAAAGGGTCCATGAAATTGAGGTTTGAGGGAAGTGATGATCCATTAGACAAGATCACTACTGCTGAAGCTATCAGAACTCTTTTTGATTACTACCGCACTTCTCAGCACTCTTATGCTGCAAGACAAAAAGTGGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGAAGCAGGAGGAAGTGAGGCTAGTTTCTTGATGCAATCTTACACCTTAACCAAGCGTTCATTCATCAACATGTCAAGGGACTTTGGTTACTACTGGCTTAGGCTTGTGATCTACATTGTTGTCACTATCTGCATTGGAACCATTTATTTGAACGTGGGCACGGGCTACAACTCAATTCTGGCTAGAGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACTTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGCCATTATGGTGTCACTGCATTTGTCATAAGCAACACATTATCTGCAATGCCATTCCTGATATTGATCACCTTTCTCTCTGGAACAATTTGTTACTTCATGGTTCAGCTACATCCTGGTTTTTGGCATTACGTGTTCTTTGTGTTGTGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCTAGTATTGTTCCCAACTTCCTCATGGGCATCATAATTGGAGCAGGGATTCAGGGGATATTCATGTTGGTCTCTGGCTACTTTAGGCTCCCACATGATATCCCAAAACCAGTGTGGCGCTACCCAATGTCATACATCAGTTTCCACTTCTGGGCATTACAGGGACAATACCAAAATGATCTTAGGGGCTTGATATTTGACAACCAAACACCAGATCTTCCAAAGATACCAGGTGAATACATCTTGGAGAATGTGTTCCAGATTGATGTTACCAGATCAAAGTGGATAGATTTAAGTGTAATCCTCAGCATGATTGTCATCTACCGCATTATTTTCTTCATCATGATCAAGATCAATGAGGATGTGACCCCTTGGGTTAGAGGGTATATAGCTAGGAGAAGAATGCAGCAGAAGAGTGGAGCTCAGAACACAACTATTGCACCTGATGTTCTCACTCAGTCTCCATCTCTGAGGACCTACATTTCCACTCAAACAAAGAATGGTACTTCAAGAAGTAGGAATGAATCCTCTTGA 2142 0.4276 MRNSEATQVSMEIEASKPAGNGTTTLPGLSPLSETLWREKANTEIIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLASNCFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMSRSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRVLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTAEAIRTLFDYYRTSQHSYAARQKVDEISKVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVQLHPGFWHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILENVFQIDVTRSKWIDLSVILSMIVIYRIIFFIMIKINEDVTPWVRGYIARRRMQQKSGAQNTTIAPDVLTQSPSLRTYISTQTKNGTSRSRNESS* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00621 713 Pfam ABC transporter 75 224 IPR003439 GO:0005524
Rops5g00621 713 ProSitePatterns ABC transporters family signature. 196 210 IPR017871 GO:0005524|GO:0016887
Rops5g00621 713 Pfam ABC-2 type transporter 386 592 IPR013525 GO:0016020|GO:0140359
Rops5g00621 713 MobiDBLite consensus disorder prediction 1 27 - -
Rops5g00621 713 FunFam ABC transporter G family member 11 47 290 - -
Rops5g00621 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 290 IPR027417 -
Rops5g00621 713 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 42 674 - -
Rops5g00621 713 Gene3D - 47 291 IPR027417 -
Rops5g00621 713 CDD ABCG_EPDR 50 278 - -
Rops5g00621 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 53 296 IPR003439 GO:0005524
Rops5g00621 713 SMART AAA_5 82 253 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00621 Rops-Chr5 10492466 10499325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00621 83 257 Calmodulin-binding Proteins AT2G36910 33.871 9.73e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00621 K05681 - gmx:100803731 1305.81