Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00609 ATGGCGCAAGGAGCATTATCTTCTTCTCCTTTTACTGACCAGTACATTTATGATGTCTTTCTTAGTTTTCGTGGTGAAGATACACGTTATGGTTTTACAGGGAATCTTTACAGTGATCTGAGTCGAAGAGTAGTCTTCACCTTCATAGATGATAATGGTCTCAAAAAAGGGGAAGAAATTACACCATCTCTTAGCACCACAATACAAAAGTCCAGGATGGCCATCGTTATTTTCTCCAAAAACTATGCATCCTCGACATTTTGTTTGGATGAACTTGTCCAGATCCTCGAGTGCCATACAAAAGGAAGGATGTGGATTTGGCCAGTTTTTTATGATGTAGATCCATCAGAAGTGAGACATCAAAGGGGGGATTATGGAAAAGAATTGACAAAGTACGAACAGGGAAGATTCAAAGATGACAAACAGAAGGTGCAAAAGTGGAGATCGGCTTTGCGCCAAGCAGCTGATTTGTCTGGTTGGCATTTCAAACTTGGAGGAGAATATGAGCATCGGTTCATTGGAAAGATCATAAGAGAAGTCTCCAGTAAGCTTAGGCGATCTTTCTTGCATATTGCTAATTACCCTGTTGGATTAGAAACTCGGATTCAAGAGATCAATTTATGGCAGATCAATTTGAAAGCTGCATACTTTCTTGCTGACATTAGAAAAAAGCCAACTAGGCATGACCTAGAGTATATCCAAGAGACAATGCTTTCTGAATTAGTTGGAGAGAGAAATATAAAGTTGGGAGATATGAATCAAGGTCATCTTTACAGTGCTTTGAGTCGAAGAGGAGTCTTCACCTTCATAGATGATAATGGTCTAAAAAAAGGGGAAGAGATTACACCATCTCTTAGCACCACAATACAAAAATCCAGGATGGCTATTGTTATTTTTTCCAAAAACTATGCATCCTCGACATTTTGTTTGGATGAACTTGTTCAGATCCTTGATTGTTATACAAAAGGAAGGATGTGGATTTGGCCAGTTTTTTATGATGTAGATCCATCAGAAGTGAGACATCAAAGGGGGAATTATGGAGAACAATTAGCAAAGCACGAAAAGGGAAGATTCAAAGATGACAAGCAGAAGGTGCAAAAGTGGAGATCGGCTTTGCGCCTAGCAACTAATTTGTCTGGTTGCCATTTCAAACTTGGAGGAGAATATGAACATCAGTTCATTGGAAAGATCATAGAAGAAGTCTCCACAATGATGTTGGATATGTCTGGAGATAAAGAGATTCAATGGAATGAAGAGGTTTTTGGAAAGTTGGAAAACCTCGAGTTGTTGATAATAAAGAAAGGTTGTTTTTTGGGAAGCCCCAAACATCTCCCGAATAGTTTGAGAGTGTTGGAATGGTGGGAATATCCTGCAACTTCTTTACCATCTTATTTTCATTCAAAGAATCTTGTCATTCTCAACTTGTCACACAGTTGCTTTCAATGGGACACATCACTGCAGGAATCAAAGGTTTTGAGTCAATTAATCTTCACAGGTTGTAAGAATATAAGAGAAATACCTGATGTGTCTGGTTTCCCAAATTTGACAAAATTGTATGTTGATGATTGCACGAATTTGATTGCGATTCATGACTCTGTTGGATTTCTTGATAAGCTGCTAAGGTTCAGTGCTGAAGGATGTACCAAGCTTAGTATTGTTCCACGTGGCATAATGTTGCCATCGTTGGAATATCTTTGCCTTCGGGACTGCAACAGTCTTGAGACTTTTCCAAAAATATTAGGATCAATGAATAAGCTCAAATCTGTAGACTTGGAAGGAACTGCAATAAAAAATCTACCACCTTCCTTGCAAAATCTTGATGGCCTTCAAATGTTAAACCTGAACAGATGCAAAATGCTTGAAAACGATGCACTCTCCAATATCATGCAGATGTTGCCAAATTTTCAATTTCTGAAAACATTGGAGTTAAGATACTCAAAGTTGACAATCCTTCCGGCGTGTATTGAAGAATGTCGCTCCTTGGAAATATTAGACTTGTCTGGTTCCAAGCAGCTTCGAGAAATCAGAGGGCTTCCACCAAATGTAGATCTTTTCGATGCAACCAACTGCACCGCACTGGAAGCCGGTTGTACAACTTCAATCACCTTTAATCGAAGCGAGGCAATTGGGGCTCGTCGACCATATCTTTATACATTGCCAGGGCATAGCATCCCAGAATGGTTTGACCTCTTTTGCAGTGGAAACTCTCTACGTTTCTGGTTTCGTAAGGAATTCCCCTCCATTGTTCTGTGTGCTATTTTAGAAGTTGGGGAGGATATTAAGCCTCTTTACACTACGGATTTTTTTATCCGTCTTAAAATCAATGATCTTCGTAAAGATTCTGGTTTTTTCTGGATTGAACCCAACTTAAATACTAATCATATATTTGTCGTTAGCGAATGTTTCTGGATTGGACCCAACTTAGATAATGAAAGTCTACGTTCAGAGAATGAGTGGAATTATGCGGAGGTTTCATTTGTGAAAGCGGGATCACCGGATTCAGATTCAAGTGATTCAGGACCATTCAAAGGGACCGGACTTTATATAAACAAAAGATTTACTAGAATGGAGGATGTTCAATTCACAAATCCTTATCCTCCTGAAAGTACATGTGATGACTCTAGCTCTAGTAGCAATCGTGATACAGTGGTGTGTGAGAATAGCAATTCAAATTCATTGGAACCAGCATGGACTATTGATGATGGTATATCAAGAGAAATGAGAACAATGATATCAGAAGCTTCAAGGGAGTTCACTCATTGGAGTAGGGACTGCATTAAAGCAAGTATGACAATTGAGGGAAGATGA 2808 0.391 MAQGALSSSPFTDQYIYDVFLSFRGEDTRYGFTGNLYSDLSRRVVFTFIDDNGLKKGEEITPSLSTTIQKSRMAIVIFSKNYASSTFCLDELVQILECHTKGRMWIWPVFYDVDPSEVRHQRGDYGKELTKYEQGRFKDDKQKVQKWRSALRQAADLSGWHFKLGGEYEHRFIGKIIREVSSKLRRSFLHIANYPVGLETRIQEINLWQINLKAAYFLADIRKKPTRHDLEYIQETMLSELVGERNIKLGDMNQGHLYSALSRRGVFTFIDDNGLKKGEEITPSLSTTIQKSRMAIVIFSKNYASSTFCLDELVQILDCYTKGRMWIWPVFYDVDPSEVRHQRGNYGEQLAKHEKGRFKDDKQKVQKWRSALRLATNLSGCHFKLGGEYEHQFIGKIIEEVSTMMLDMSGDKEIQWNEEVFGKLENLELLIIKKGCFLGSPKHLPNSLRVLEWWEYPATSLPSYFHSKNLVILNLSHSCFQWDTSLQESKVLSQLIFTGCKNIREIPDVSGFPNLTKLYVDDCTNLIAIHDSVGFLDKLLRFSAEGCTKLSIVPRGIMLPSLEYLCLRDCNSLETFPKILGSMNKLKSVDLEGTAIKNLPPSLQNLDGLQMLNLNRCKMLENDALSNIMQMLPNFQFLKTLELRYSKLTILPACIEECRSLEILDLSGSKQLREIRGLPPNVDLFDATNCTALEAGCTTSITFNRSEAIGARRPYLYTLPGHSIPEWFDLFCSGNSLRFWFRKEFPSIVLCAILEVGEDIKPLYTTDFFIRLKINDLRKDSGFFWIEPNLNTNHIFVVSECFWIGPNLDNESLRSENEWNYAEVSFVKAGSPDSDSSDSGPFKGTGLYINKRFTRMEDVQFTNPYPPESTCDDSSSSSNRDTVVCENSNSNSLEPAWTIDDGISREMRTMISEASREFTHWSRDCIKASMTIEGR* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00609 935 ProSiteProfiles TIR domain profile. 236 405 IPR000157 GO:0007165
Rops5g00609 935 MobiDBLite consensus disorder prediction 864 889 - -
Rops5g00609 935 ProSiteProfiles TIR domain profile. 15 184 IPR000157 GO:0007165
Rops5g00609 935 SUPERFAMILY L domain-like 402 737 - -
Rops5g00609 935 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 421 636 IPR044974 GO:0006952
Rops5g00609 935 Gene3D - 14 189 IPR035897 -
Rops5g00609 935 Pfam TIR domain 256 408 IPR000157 GO:0007165
Rops5g00609 935 Pfam TIR domain 17 186 IPR000157 GO:0007165
Rops5g00609 935 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 186 - -
Rops5g00609 935 Gene3D Ribonuclease Inhibitor 401 557 IPR032675 -
Rops5g00609 935 Gene3D Ribonuclease Inhibitor 558 702 IPR032675 -
Rops5g00609 935 SMART till_3 255 378 IPR000157 GO:0007165
Rops5g00609 935 SMART till_3 16 157 IPR000157 GO:0007165
Rops5g00609 935 SUPERFAMILY Toll/Interleukin receptor TIR domain 255 380 IPR035897 -
Rops5g00609 935 FunFam Disease resistance protein (TIR-NBS-LRR class) 245 407 - -
Rops5g00609 935 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Rops5g00609 935 Gene3D - 250 400 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00609 Rops-Chr5 10282038 10291724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00609 391 687 WRKY Transcription Factor Family AT4G12020 31.447 1.94e-21 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00609 - - var:108344061 520.39