Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00606 ATGGCACCACCAACTCCATCATGTGTGAAATTACCATTTCACTTTGTTCTAACTTTGTTCATTTTTTTGTGCCATGCAAATTCTCAGTCTCAGTTGTATGATCAAGAACATGCAGTCCTATTGAATATAAAGAAGTATCTCCAAAACCCATCTTTTCTTAAACACTGGACTCCATCAAACTCTTCTTCTCACTGTTCTTGGCCAGAGATCACATGCACCAATGGTTCCATCACTGGACTCACTCTTTCCAAGATGAACATAAACCAAACTACACCATCTTTCATATGTGAACTCAAGAACCTTACACATGTTGACTTTAGCATCAATTTCATCCCTGGTGATTTCCCAACATCTCTCTATGGTTGTTCCAAATTAGAGTACCTAGACCTTTCCTTTAACAACTTTGATGGCAATATTCCTGATGATATTGATCGTTTGGGTGCTAATTTGCAATATCTTAACCTTGGTTCAACCAACTTCACTGGTGATATTCCTTCTAGTATTGGGAAGTTAAAGGAATTGAGACAACTCAAACTTCAATATTGCCTATTTAATGGTACTGTCCCTGCTGAGATTGGTAACTTGTCCAATCTTGAGTTCTTGGATTTGTCCTCTAACACCATGTTCCCTTCTTGGAAGTTGCCATGGAGCTTCACCAATTGGAACAAATTGAAGGTTTTTTATATGTATGGCTCTAACTTGGTTGGTGAAATACCTGAAAACATTGGTGATATGGTGGCTTTGGAGAAGTTGGATATGTCAAAAAATGACTTAACTGGTGGAATTCCAAGTGGTTTGTTCATGCTGAAGAATCTGAGCTCATTGTATCTTTACCAAAACAGTCTTTCTGGGGAGATACCTGGTGTGGTTGAAGCATTGAACTTGATCAACCTTGATGTTGCACAGAACAATCTTGTAGGGAAAATACCAGAAGATTTTGGAAAGCTCCAAAAGTTAACATGGTTCAGTTTATCTATGAATAGCTTATCAGGTGTGATACCAGAAAGCTTAGGCCGTCTTCCATCTATTGCTGATTTTCGTGTGTTTTTCAATAAGTTATCAGGTACTCTTCCTCCTGATTTTGGCCGTTACTCAAAGCTCAAAACCTTTCTGATTGCATCTAATAGTCTTGAGGGAAAGTTACCAGAGAATTTATGCTATCATGGTGAGTTACTTAATTTAACTGTTTATGACAATAATCTTAGTGGGGAGTTGCCAGAATCACTAGGAAATTGCAGTAGTTTGATGGATCTGAAAATTTACAAAAATGAGTTTTCTGGTAATATTCCCAGTGGTCTTTGGGCATCTTTCAATTTGTCAAATTTCATGGTGAGTCATAATAAGTTCACTGGTGAACTTCCTGAGAGGTTGTCTTTGAATGTTTCAAGATTTGAGATAGGTTACAATCAGTTTTCTGGTAGAATTCCAGCTGGAGTATCTTCATGGACTAATGTGGTAGTGTTTGATGCTAGTAAGAATTACCTTAATGGAAGTATTCCACAAGAGCTAACATCTCTTCCAAAGCTAACAACTCTATTACTTGATCAAAACCAACTCACTGGGCCACTTCCATCAGATATAGTATCATGGAAGTCACTAGTAACTCTAAATTTGAGCCAAAACCAACTCTCTGGACCAATCCCAGATGCAATTGATCAGTTACCTGTCCTTAGTCAACTTGACCTCTCAGAAAATGGATTCTCTGGCAAAATTCCTTCTCAACTTCCCAGACTCACCAATCTCAATCTATCCTCTAATCATTTGACAGGGAGGATTCCAAGTGAATTTCAAAATTCTGTGTATGCCAGCAGTTTTTTAGGCAATTCTGGTCTCTGTGTTGATACCCCAGTACTGAACCTTACCTTGTGCAATTCTGGCCCTCAAAGGAAAAGCAAAGGTTCATCATGGTCTATTGGTTTGGTTATGAGCCTTGTGATAGCAGCCTTCTTATTGGCTTTTATTATATCACTCTTGATTATCAGACTTCACAGAAAAAGAAAGCAAGGATTGGATAACTCATGGAAGCTCATGTCCTTTCAGAGGCTGAATTTCACAGAATACAGCATTGTCTCATCAATGACAGAACAAAATATTATTGGCAGTGGTGGATATGGTACAGTATACCGTGTAAATGTTGATGGTTTAGGATATGTTGCTGTGAAAAAAATTTGGAATAATAGAAAGTTAGATCAGAATCTTGAGAAATCATTTCTCGCAGAAGTTAAAATATTGAGCAATATTCGTCATAACAACATTGTGAGGTTGTTGTGTTGTATCTCTAATGAGAATTCTATGCTGCTTGTTTATGAGTATCTTGAAAACCGTAGCCTAGATAAGTGGCTGCACATGAAGAGTAAGTCATCAATTGTGTCAGGTTCAGTCCATCATCTGGTCCTTGATTGGCCAAAGAGGTTGAAAATAGCCATTGGAGCTGCTCAAGGTTTGTGCTACATGCACCATGATTGTTCACCACCTATTGTTCATAGAGATATAAAAACAAGCAACATACTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGATTGGCTAGGATGTTAATCAAGCCAGGGGAATTTAACACCATGTCAAATGTGATTGGCTCATTTGGCTATATTGCTCCAGAATATGTTCAATCAACAAGAATAAGTGAAAAGATTGATGTGTTTAGCTTTGGGGTAGTCCTATTGGAATTGACAACTGGTAAAGAAGCTAATTATGGAGACCAACACTCATCTCTTGCAGAATGGGCATGGCGTCACTTTGTGTTAGGAACCAATGTGGAAGAATTGCTAGATAAAGATGTCATGGAAGCTAGTTACTTGGATGAAATGTGCACTGTTTTCAAACTTGGGGTCATGTGTACTGCAACAATGCCTGCTAGCAGGCCTTCCATGAAGGAGGTCTTGCAAATATTGCTCTCCTGTGGAGAACCATTTGCTTATGGAGAGAACAAAGTTGGCCACTACCATGATGTTGTTCCCCTTCTTGGGAATTCTAAAAGGGACATTAGCTTGGATGTTGTCGATTTGTGA 3039 0.3843 MAPPTPSCVKLPFHFVLTLFIFLCHANSQSQLYDQEHAVLLNIKKYLQNPSFLKHWTPSNSSSHCSWPEITCTNGSITGLTLSKMNINQTTPSFICELKNLTHVDFSINFIPGDFPTSLYGCSKLEYLDLSFNNFDGNIPDDIDRLGANLQYLNLGSTNFTGDIPSSIGKLKELRQLKLQYCLFNGTVPAEIGNLSNLEFLDLSSNTMFPSWKLPWSFTNWNKLKVFYMYGSNLVGEIPENIGDMVALEKLDMSKNDLTGGIPSGLFMLKNLSSLYLYQNSLSGEIPGVVEALNLINLDVAQNNLVGKIPEDFGKLQKLTWFSLSMNSLSGVIPESLGRLPSIADFRVFFNKLSGTLPPDFGRYSKLKTFLIASNSLEGKLPENLCYHGELLNLTVYDNNLSGELPESLGNCSSLMDLKIYKNEFSGNIPSGLWASFNLSNFMVSHNKFTGELPERLSLNVSRFEIGYNQFSGRIPAGVSSWTNVVVFDASKNYLNGSIPQELTSLPKLTTLLLDQNQLTGPLPSDIVSWKSLVTLNLSQNQLSGPIPDAIDQLPVLSQLDLSENGFSGKIPSQLPRLTNLNLSSNHLTGRIPSEFQNSVYASSFLGNSGLCVDTPVLNLTLCNSGPQRKSKGSSWSIGLVMSLVIAAFLLAFIISLLIIRLHRKRKQGLDNSWKLMSFQRLNFTEYSIVSSMTEQNIIGSGGYGTVYRVNVDGLGYVAVKKIWNNRKLDQNLEKSFLAEVKILSNIRHNNIVRLLCCISNENSMLLVYEYLENRSLDKWLHMKSKSSIVSGSVHHLVLDWPKRLKIAIGAAQGLCYMHHDCSPPIVHRDIKTSNILLDAQFNAKVADFGLARMLIKPGEFNTMSNVIGSFGYIAPEYVQSTRISEKIDVFSFGVVLLELTTGKEANYGDQHSSLAEWAWRHFVLGTNVEELLDKDVMEASYLDEMCTVFKLGVMCTATMPASRPSMKEVLQILLSCGEPFAYGENKVGHYHDVVPLLGNSKRDISLDVVDL* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00606 1012 Gene3D Phosphorylase Kinase; domain 1 681 771 - -
Rops5g00606 1012 SUPERFAMILY Protein kinase-like (PK-like) 684 974 IPR011009 -
Rops5g00606 1012 SUPERFAMILY L domain-like 43 379 - -
Rops5g00606 1012 Pfam Protein kinase domain 695 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00606 1012 SUPERFAMILY RNI-like 297 598 - -
Rops5g00606 1012 Gene3D Transferase(Phosphotransferase) domain 1 772 984 - -
Rops5g00606 1012 SMART LRR_typ_2 245 269 IPR003591 -
Rops5g00606 1012 SMART LRR_typ_2 316 340 IPR003591 -
Rops5g00606 1012 SMART LRR_typ_2 506 530 IPR003591 -
Rops5g00606 1012 SMART LRR_typ_2 575 598 IPR003591 -
Rops5g00606 1012 SMART LRR_typ_2 195 220 IPR003591 -
Rops5g00606 1012 FunFam Receptor-like protein kinase HSL1 673 771 - -
Rops5g00606 1012 Pfam Leucine Rich Repeat 577 598 IPR001611 GO:0005515
Rops5g00606 1012 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515
Rops5g00606 1012 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 191 291 - -
Rops5g00606 1012 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 294 975 - -
Rops5g00606 1012 FunFam Kinase family with leucine-rich repeat domain-containing protein 772 991 - -
Rops5g00606 1012 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524
Rops5g00606 1012 Gene3D Ribonuclease Inhibitor 35 148 IPR032675 -
Rops5g00606 1012 ProSiteProfiles Protein kinase domain profile. 693 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00606 1012 Gene3D Ribonuclease Inhibitor 346 621 IPR032675 -
Rops5g00606 1012 Gene3D Ribonuclease Inhibitor 149 210 IPR032675 -
Rops5g00606 1012 FunFam Receptor-like protein kinase HSL1 isoform A 33 186 - -
Rops5g00606 1012 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Rops5g00606 1012 SMART serkin_6 693 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00606 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Rops5g00606 1012 Gene3D Ribonuclease Inhibitor 211 345 IPR032675 -
Rops5g00606 1012 FunFam Receptor-like protein kinase HSL1 isoform A 299 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00606 Rops-Chr5 10221070 10224528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00606 30 978 Receptor kinase-like Gene Family AT5G25930 51.670 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops5g00606 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00606 - - gmx:100813894 1566.98