Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00604 ATGTCATCATCATCAACCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGAGAACCATTGATAATGGAGGAAGTGCAAGTGAGTCCTCCTCAATCAATGGAGATTAGGATTAAGGTTGTTTCCACCTCTCTCTGTCGCAGTGATCTTGTTGCTTGGGAATCTCATGCCATATTTCCTCGCATATTTGGTCATGAAGCATCAGGGATTGTTGAGAGTGTGGGGCAGGGAGTGACTGAATTCAAAGAGGGAGACCATGTGCTTACAGTATTCATTGGAGAATGCATGGCATGCAAGCTGTGCATATCAGGAAAAACTAACATTTGTCAAGTTTTGGGATTGGAAAGAAAGGGTTTAATGCATAGTGATCAGAAGACACGCTTCTCAGTAAAAGGGAAGCCTGTTTATCATTTTTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAGTCCATTCTGGATGTGCAGTGAAAGTTAGCCCGCATGCATCTCTTGAGAAAATATGCCTTCTGAGCTGTGGTGTTGCTGCAGGTCTAGGAGCAGCATGGAATGTTGCTAATGTGTCAAAAGGATCAACAGTGGTGATATTTGGTCTTGGAACTGTAGGCCTTTCTGTTGCACAAGGTGCCAAACTAAGGGGTGCATCTCGAATAATTGGTGTGGACAACAATCCGCAGAAGTGTGAAAAAGCTAAAGCTTTTGGGATTACAGAAGTTGTTGACCCGAATTCCTATGAAGAACCTATTGCTCAAGTTATTAAGCGCATTACTGATGGCGGGGCAGATTTCTCTTTTGAATGTGTAGGTGACACTGATATGATAACCACTGCATTGCAGTCATGTTGTGATGGATGGGGTTTGATTGTAACACTTGGTGTGCCAAAGGTGAAGCCTGAGATGTCAGCTCATTATGCACTATTCCTAATGGGAAGAACACTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTGCCTTCATTAGTAGAGAAGTATGTGAACAAGGAAATCCAGATTGATGACTATATAACACACAATTTGCCATTTGATGACATTAACAAAGCTTTCAATCTCATGAGGGAAGGAAAGTGTCTGCGTTGTGTTATCCACATGTCAAAATAA 1134 0.4233 MSSSSTPQVITCKAAVAWGAGEPLIMEEVQVSPPQSMEIRIKVVSTSLCRSDLVAWESHAIFPRIFGHEASGIVESVGQGVTEFKEGDHVLTVFIGECMACKLCISGKTNICQVLGLERKGLMHSDQKTRFSVKGKPVYHFCAVSSFSEYTVVHSGCAVKVSPHASLEKICLLSCGVAAGLGAAWNVANVSKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCEKAKAFGITEVVDPNSYEEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLIVTLGVPKVKPEMSAHYALFLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMREGKCLRCVIHMSK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00604 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Rops5g00604 377 PANTHER ALCOHOL DEHYDROGENASE 8 373 - -
Rops5g00604 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 339 IPR036291 -
Rops5g00604 377 Gene3D - 15 370 - -
Rops5g00604 377 Pfam Zinc-binding dehydrogenase 204 327 IPR013149 -
Rops5g00604 377 FunFam Alcohol dehydrogenase 6 15 194 - -
Rops5g00604 377 SUPERFAMILY GroES-like 328 374 IPR011032 -
Rops5g00604 377 CDD alcohol_DH_plants 10 374 - -
Rops5g00604 377 Gene3D - 180 318 - -
Rops5g00604 377 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 318 - -
Rops5g00604 377 SUPERFAMILY GroES-like 6 185 IPR011032 -
Rops5g00604 377 Pfam Alcohol dehydrogenase GroES-like domain 38 160 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00604 Rops-Chr5 10202536 10208175 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00604 15 112 Monolignol Biosynthesis Gene Families AT2G21730 35.238 1.05e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00604 K00001 - gmx:100819938 697.967