Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00601 ATGTCATCATCATCAACCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGAGAACCATTGGTAATGGAGGAAGTGCAAGTGAGTCCTCCTCAATCAATGGAGATAAGGATTAAGGTTGTTTCCACCTCTCTCTGTCGCAGTGATCTTGTTGCTTGGGAATCTCATGCTATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGTGGGGCAGGGAGTGACTGAATTCAAAGAGGGAGACCATGTGCTTACAGTATTCATTGGAGAATGCATGGCATGCAAGCTGTGCACTTCAGGAAAAACTAACATTTGTCAAGTTTTGGGATTGGAAAGAAAGGGTTTAATGCATAGTGATCAGAAGACACGCTTCTCAGTAAAAGGGAAGCCTGTTTATCATTTTTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAGTCCATTCTGGATGTGCAGTGAAAGTTAGCCCGCATGCATCTCTTGAGAAAATATGCCTTCTGAGCTGTGGTGTTGCTGCAGGTCTAGGTGCAGCATGGAATGTTGCTAATGTGTCAAAAGGATCAACAGTGGTGATATTTGGTCTTGGAACAGTAGGCCTTTCTGTTGCACAAGGTGCCAAACTAAGGGGTGCATCTCGAGTAATTGGTGTGGACAACAATCGGCAGAAGTATGAAAAAGCTAAAGCTTTTGGGATTACAGAAGTTGTTGACCCGAATTCCTATGAAGAACCTATTGCTCAAGTTATTAAGCGCATTACTGATGGGGGGGCAGATTTCTCTTTTGAATGTGTAGGTGACACTGATATGATAACCACTGCATTGCAGTCATGTTGTGATGGATGGGGTTTGACTGTGAAGCCTGAGATGTCAGCTCATTATGCACTATTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTGCCTTCACTAGTAGAGAAGTATGTGAACAAGGAAATCCAGATTGATGACTATATAACACACAATTTGCCATTTGATGACATTAACAAAGCTTTCAATCTCATGAGGGAAGGAAAGTGTCTGCGCTGTGTTATCCACATGTCAAAATAA 1113 0.4259 MSSSSTPQVITCKAAVAWGAGEPLVMEEVQVSPPQSMEIRIKVVSTSLCRSDLVAWESHAIFPRIFGHEASGIVESVGQGVTEFKEGDHVLTVFIGECMACKLCTSGKTNICQVLGLERKGLMHSDQKTRFSVKGKPVYHFCAVSSFSEYTVVHSGCAVKVSPHASLEKICLLSCGVAAGLGAAWNVANVSKGSTVVIFGLGTVGLSVAQGAKLRGASRVIGVDNNRQKYEKAKAFGITEVVDPNSYEEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVKPEMSAHYALFLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMREGKCLRCVIHMSK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00601 370 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Rops5g00601 370 PANTHER ALCOHOL DEHYDROGENASE 8 366 - -
Rops5g00601 370 FunFam Alcohol dehydrogenase 6 15 194 - -
Rops5g00601 370 Gene3D - 15 363 - -
Rops5g00601 370 SUPERFAMILY GroES-like 6 185 IPR011032 -
Rops5g00601 370 Pfam Zinc-binding dehydrogenase 204 315 IPR013149 -
Rops5g00601 370 FunFam Uncharacterized protein 312 363 - -
Rops5g00601 370 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 332 IPR036291 -
Rops5g00601 370 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 311 - -
Rops5g00601 370 Gene3D - 180 311 - -
Rops5g00601 370 SUPERFAMILY GroES-like 319 367 IPR011032 -
Rops5g00601 370 Pfam Alcohol dehydrogenase GroES-like domain 38 160 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00601 Rops-Chr5 10171141 10179253 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00601 15 112 Monolignol Biosynthesis Gene Families AT2G21730 36.190 2.63e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00601 K00001 - gmx:100819938 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00601 5 10171141 10179253 Rops5g00601 5 10171141 10179253 ECH