Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00588 ATGGATCGAAAAGCGTGTGAAGAATCAGTAAGAGAAGCTTCTTCGGATTTCAAGTGTGAGAAGAAGATTCTCCACGCTGTTGATAATTCAATTGCATTACCCACTCCAGAGAAAACGAGTGAACCCTTACCTGTTAAATCCAAAGAGGAACAACAAACCCAGCTTCCAGAAAAATACAGGAACATTGCGGATTTGTTTAGACATGTGAGTTGCTCACTTAGATTGCTGAATCTGCTTAAAAAGTCTCCGACTTTTCAAAATATTTGCAGCCAGGTTGAAGTTCTTGCCAAGAGAAAATTCTGCTATGGCCATCTTGCGCAGATGAAGTATCTACTTTCTGAAGGTATGCATATAGATAAGGTGCTTGTTCATGATAAGAAGAGCTTGTGCATGAAGCCAGATTTGAAGATCACCTTGGTATTTGAGGTTGTGGAAGAACACACTGAAGAATCTGCTGATAAGGCTATACAGCAGTATTTTATCTCTAGGCTGATTGATTTCTTCAATATGCATCCTGAGGCTACAGATATTCCGGAGGCCATACTACCAGAGCCCTTTAGCCAAAGAACTTGTAGCTTGATTTGTGAAGATTTTCCTGTAAATTCTTCAACAGCACTTTCATCAACTTCCAATCAAACCGAACTGTTGCCTGAGAAATTCCAATTGTATCCATCTTTTAGTAGATGTTTTTCTCAGAAACTTGTTGCTGACCAGAAAGAAAAGGTTCAGTGCTCGTCATCCAATAAAATTGATCTGTCATCATATCCATCTGATTTGCTAGATAACAAAAAAAGTGAAAGCACATGGCAGAAAGGATGTGCACCATTACATGATCATGTCACTAATTTGAATACAGAAAGTAGGCAGCAGAAGGAATCATTTGCATCGTGTTTTCAAGCTAGTGTTATTAATACACCAGTACATATGATCTCCCCTTCTCATTCTGTTGGTCACAGTAGTGCTGAAAGCCCTGATATAAAAAGTGTCTCTTGCGCTGATAGCTTGACAAAGACACCTGCGCAATCAGCACCTGGGAGATTGTTGCCTGTTTCTGATGTTAAGCTTCAGAACATGACTGCCCAAAAGTCTACATCATGTTTTAAGCCTGCAAAAAGAGTGCTTGACTTTTCTCTCGCAGAAGGCAATGGTGATTTGGACAACAGAGTAGACATGTTAGAATCTAGCAGAGCTCCACTTGACTTTGATAACATCCCTGAACCTAGCAGAGGATGTTCTGAGGATTGCAATTCTTTTGGTTCTGCTGCCATACCTCAGGAGGTAGAAGAGAGCCTTGATGACTCTTTTGAGAAAACCAACCAAAATAGAGCTGGTTTAGATGCAGGGCATAAAAATTTTTCAGCATTGGTGGATATGGTTAATGTGATTGACTCTATATTTCGTTCTATTAAAAGAACTCCAATCACAAAAGAGAAACTCCTGCAAAAGATAATTATGAACAGTTTGGATTTTGTTGAGATTAGAGAAGCTGAGGAACAGATCGAGATTCTGGAAAAGTTGGTACCAGACTGGATTTGCAAGAAGTTGGCTTCTACTGGAGATATTATGTACTGCATCAAGAAAGTGTCAGATTTGGACTCGGTTCGATCAAGGATTTGCGGCGATGTGACTATACAGCAACTGGCTTCTGGTGAGTATATTTGCTGTCACAAAAAGCAAGGAGAGGAAGAGTAA 1692 0.3989 MDRKACEESVREASSDFKCEKKILHAVDNSIALPTPEKTSEPLPVKSKEEQQTQLPEKYRNIADLFRHVSCSLRLLNLLKKSPTFQNICSQVEVLAKRKFCYGHLAQMKYLLSEGMHIDKVLVHDKKSLCMKPDLKITLVFEVVEEHTEESADKAIQQYFISRLIDFFNMHPEATDIPEAILPEPFSQRTCSLICEDFPVNSSTALSSTSNQTELLPEKFQLYPSFSRCFSQKLVADQKEKVQCSSSNKIDLSSYPSDLLDNKKSESTWQKGCAPLHDHVTNLNTESRQQKESFASCFQASVINTPVHMISPSHSVGHSSAESPDIKSVSCADSLTKTPAQSAPGRLLPVSDVKLQNMTAQKSTSCFKPAKRVLDFSLAEGNGDLDNRVDMLESSRAPLDFDNIPEPSRGCSEDCNSFGSAAIPQEVEESLDDSFEKTNQNRAGLDAGHKNFSALVDMVNVIDSIFRSIKRTPITKEKLLQKIIMNSLDFVEIREAEEQIEILEKLVPDWICKKLASTGDIMYCIKKVSDLDSVRSRICGDVTIQQLASGEYICCHKKQGEEE* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00588 563 Pfam DNA replication factor Cdt1 C-terminal domain 441 511 IPR032054 -
Rops5g00588 563 Coils Coil 493 513 - -
Rops5g00588 563 SMART CDT1_2 55 184 IPR014939 -
Rops5g00588 563 Pfam DNA replication factor CDT1 like 55 119 IPR014939 -
Rops5g00588 563 Gene3D - 447 558 IPR038090 -
Rops5g00588 563 SUPERFAMILY "Winged helix" DNA-binding domain 50 186 IPR036390 -
Rops5g00588 563 MobiDBLite consensus disorder prediction 33 53 - -
Rops5g00588 563 CDD Cdt1_m 44 190 IPR014939 -
Rops5g00588 563 PANTHER DNA REPLICATION FACTOR CDT1 36 540 IPR045173 GO:0003677|GO:0030174|GO:0071163
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00588 399 538 Core DNA Replication Machinery Family AT2G31270 30.000 2.56e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00588 K10727 - gmx:102670055 649.047