Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00580 ATGGCTTTGAGTTCTGAGTCCTACAAGTGGAAGTATGATGTGTTCTTGAGCTTCAGAGGTGTTGACACCCGCATGAATTTTATAAGCCATCTCTATCATGCATTAAGCCAAAAGAGTGTTAATACTTTCATTGACTCTAAGGAGCTCAACAGGGGAGAGAAGATTTCACCATCACTTTTAAGAGCTATTGAAGACTCAAGGATCTCCATAGTCATATTGTCTGAAACTTATGCTTCTTCCACTTCTTGCTTAGATGAACTCCTTAAGATCCTTGAGTGTAGGAATTCCAAGGGTCAACTGGTTTTGCCAGTCTTTTATCATGTGAATCCATCTCAAGTAAGAGAACAAAAGGGAAGTTTTGAAGTAGCTTTGGCCAAGCATGAAGATAAATTCAGGGATGATATGGACAAGTTAAAACGGTGGAGGGCAGCTCTATGTGAGGTAGCTACTTTGTCTGGGTGGCACTTGGAGATGGGATTAAGGCTAGATCTACCGGAACCTGATGAGGGTAACATAAGTGGCAAAGCCTTGGCAAATATGAAAAGACTTAGACTTCTCATGATCAATAATGCACATGTTTCAGATGAAATTCCATATCTATCTCATGAGCTAAGATTAATTGATTGGCCGGGGTACCCTTCTTCAACTCTACCACCAAACTTCCATCCAAAGAGGCTTGTTTCTTTAAGTATGAGCCATAGTCGCATTAAACACTTATGGAAAGGAGCTAAGATATTCCAAGACTTAAAACTCGTATCCTTTAGCTGCTGTGAATACCTCACTGAAATTCCAGACTTCTCAATGATTCCAAACCTTGAGAGTCTCAGCCTAGACAATTGTATAAGTTTAACTAAGGTGCATGAGTCTGTAGAATCTCTTGATAAGCTTGTTACTTTAAATTTCCTATTATGCACCAATCTCAAGACTCTTCCAAGTTGTTTCAAGTCAAAATCTCTACATACCCTCCTCCTTACTGGCTGCTCAAAGGTTAGAAAGTTCCCTGAGATAGTTGAGAAAATGGAACATCTTGAAGAAATCCTTTTGCAAGGGACTGCCATTAAAGAACTACCACAGTCAATTGAATATCTTACAGGGCTAAAAGTATTACTCTTAGATTCTTGCCAAAAGCTTGAGCATCTTCCTAGTAGCATTCAGAATTTGCAATACCTTACTGGACTTGGTCTCACTGGCTGCTCTAAGCTCCAAGAGCTTCCAAAGCTTCCACTAAATACTAGATATATTGACACAAGTAATTGCAGATCTTTGGAGAGGTTTCCAACATTATCCAGCCCATCAAATTTTAGTGCAGAGGATTTCCCAAGGTTTTATAGGATAGTGTTCATTAACTGCCATAAACTGATTAATAAACAGGTCCAAGACCACATAACAAATCTCTTCTACAATGAGGAATATATTGATGAAGTTATGCTTCCAGGGAGCAAGATTCCAGATTGGTTTCATCATCAAAGTACTAATGGTTCAATTTCTCTTGAGGTAGCTTCAAGGATGTATGGTAAGCCTGTGAAGTTGTTTTTTGGTGCAGTTTTTGAGTTGGACGAAGGTGCTACTGAAACTGGCATGCTTTTATGTGTATATGAGTTGATCATCATCAATGATCAAAAGGTACTTGCAATAGCTAGAAGTTTTGAATCACTGGACTCAAATCATGTTTGGCTGACTAGGATCAAATTGGGTCGTTTGATGTGGCGCCTCAACAGCATGCGTTATTGGAATCACTTTTGGATTTCATTTGGGATATCTGAAGTGTCACCAAAGGTGAAAGTAAAAGCATCAGTGAAGAGTTGTGGTTTCCATATTTTGTGCAGGCAAAAAGGGTATCTGATTGATCATGAAACAGTGAGGAAGTACACTGGTTAA 1878 0.3914 MALSSESYKWKYDVFLSFRGVDTRMNFISHLYHALSQKSVNTFIDSKELNRGEKISPSLLRAIEDSRISIVILSETYASSTSCLDELLKILECRNSKGQLVLPVFYHVNPSQVREQKGSFEVALAKHEDKFRDDMDKLKRWRAALCEVATLSGWHLEMGLRLDLPEPDEGNISGKALANMKRLRLLMINNAHVSDEIPYLSHELRLIDWPGYPSSTLPPNFHPKRLVSLSMSHSRIKHLWKGAKIFQDLKLVSFSCCEYLTEIPDFSMIPNLESLSLDNCISLTKVHESVESLDKLVTLNFLLCTNLKTLPSCFKSKSLHTLLLTGCSKVRKFPEIVEKMEHLEEILLQGTAIKELPQSIEYLTGLKVLLLDSCQKLEHLPSSIQNLQYLTGLGLTGCSKLQELPKLPLNTRYIDTSNCRSLERFPTLSSPSNFSAEDFPRFYRIVFINCHKLINKQVQDHITNLFYNEEYIDEVMLPGSKIPDWFHHQSTNGSISLEVASRMYGKPVKLFFGAVFELDEGATETGMLLCVYELIIINDQKVLAIARSFESLDSNHVWLTRIKLGRLMWRLNSMRYWNHFWISFGISEVSPKVKVKASVKSCGFHILCRQKGYLIDHETVRKYTG* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00580 625 Gene3D - 5 161 IPR035897 -
Rops5g00580 625 ProSiteProfiles TIR domain profile. 10 181 IPR000157 GO:0007165
Rops5g00580 625 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Rops5g00580 625 Pfam TIR domain 11 147 IPR000157 GO:0007165
Rops5g00580 625 Gene3D Ribonuclease Inhibitor 162 315 IPR032675 -
Rops5g00580 625 Pfam C-JID domain 477 609 IPR045344 -
Rops5g00580 625 SMART till_3 11 151 IPR000157 GO:0007165
Rops5g00580 625 SUPERFAMILY L domain-like 154 447 - -
Rops5g00580 625 Gene3D Ribonuclease Inhibitor 316 468 IPR032675 -
Rops5g00580 625 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 161 - -
Rops5g00580 625 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 157 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00580 Rops-Chr5 9932610 9937165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00580 199 405 WRKY Transcription Factor Family AT4G12020 40.000 4.49e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00580 - - lja:Lj2g3v0604110.1 737.258