Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00550 ATGGCGCAGCTTCCCTGTGACGCTGATGGCCTCTGTATGCTCTGCAAAAACAAGCCACCTCCCTCCGAGACTCTCGCTTGCAATACCTGTGCCACTCCCTGGCACGTTCCGTGCCTTCCCCTCGCTCCAACCACCCTTCTTGATTGGGACTGCCCTGATTGTTCCCACCTCAAACCCGACCATGTCACCGCCCCTGCTCCGCCTCCCGGCGACCTCGTCTCCGTCATCCGTGCTTTTCTATCCCTTCCTCGTTCTCTCTTCTCTCTCTCTCGCTTGCATTTTTCTCTCTCAATCTGCTCTTCACTCGAGTTCGTTGCTATGCTCAGCTTTCACTCCATCCCAACCATACCTTAA 354 0.5565 MAQLPCDADGLCMLCKNKPPPSETLACNTCATPWHVPCLPLAPTTLLDWDCPDCSHLKPDHVTAPAPPPGDLVSVIRAFLSLPRSLFSLSRLHFSLSICSSLEFVAMLSFHSIPTIP* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00550 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 66 IPR013083 -
Rops5g00550 117 SMART PHD_3 11 55 IPR001965 -
Rops5g00550 117 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Rops5g00550 117 SUPERFAMILY FYVE/PHD zinc finger 4 65 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00550 Rops-Chr5 9065533 9065886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00550 3 70 C2H2 Transcription Factor Family AT5G39550 54.930 8.88e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00550 K10638 - gmx:100786796 108.612