Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00509 ATGTCTTCTGCCGGCGGCGGTGACGGCGGTGTTATCTCCAGCGAACCTCGCCAATACTTTTGCCACCAGTGCGAACGCACCGTTTCAATTTCCCCTTCCTCCTCCGATCTTATCTGCCCCAATTGCAACGGTGGCTTCCTCGAAGAACTCGAAATCCCAATCCCTAACCCTAACCCTGTCAATAATCCCTTCTTATCCTTCACCACCTCCGAATTCCCCGCTGCCGGCGTCGGATTTCCTCTCGTATTCTCCGGTGGTGCCACTCAACCCTTCGATGATCTATTCAGCAACCGATCATCGCCTTCGCAGTCTCCATTCACCGGCGAAGCGTTCAATCCGATCATGTTCCTCCAGAACTATGTCCAAAACCTAAGATCAGGAGGCGCCAACGTCCAATTCGTGATCGAAAACTCCGGAGACCCTAGCGGAACGTTCCGGTTCCCCGGAAATTTGAACTCCGGCGATTACTTCTTCGGTCCTGGCCTCGAGGAGTTGATCCAGCAACTTGCGGAGAACGATCCTAACCGTCACGGTACTCCCCCAGCGTCGAAGTCCGCCGTGGAGGGGCTTCCGGAAATTTCCGTTACGGAGGATCTGCTTTCATCGGATTCTTCGCAATGCGCTGTGTGCAAAGACACGTTTGTCCTCGGCGAGAAAGCGAAGCAGATGCCATGCAAACACATTTATCATTCGGATTGCATAATGCCATGGTTGGAATTGCACAATTCTTGCCCCGTTTGTCGTTACGAGTTGCCCACCGATGATCCCGATTATGAGCAGAGGGCTCACCCTGGTGGGGTGGCGCCGGTGGGGCCCGGTGGATCTGCTGATTCTACCGGTGGAGATAATTCACAGAGAAGGAGGTTTAGGGTGTCTTTGCCGCTTTCGTTAAGGCAATTTGCTACTTCTGTTGCTGAGACAAGCAATGTTGGGAATGCTAATAACAACAACAACAATAGCAATAGTGGAAATAATAGTGGGCAATCGAATTCTGAAAGCAGGGGGAATGAGAATTTTGAATCGGAGACCAGACAAGAAGATCTTGATTGA 1050 0.5162 MSSAGGGDGGVISSEPRQYFCHQCERTVSISPSSSDLICPNCNGGFLEELEIPIPNPNPVNNPFLSFTTSEFPAAGVGFPLVFSGGATQPFDDLFSNRSSPSQSPFTGEAFNPIMFLQNYVQNLRSGGANVQFVIENSGDPSGTFRFPGNLNSGDYFFGPGLEELIQQLAENDPNRHGTPPASKSAVEGLPEISVTEDLLSSDSSQCAVCKDTFVLGEKAKQMPCKHIYHSDCIMPWLELHNSCPVCRYELPTDDPDYEQRAHPGGVAPVGPGGSADSTGGDNSQRRRFRVSLPLSLRQFATSVAETSNVGNANNNNNNSNSGNNSGQSNSESRGNENFESETRQEDLD* 350
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00509 349 SMART ring_2 207 247 IPR001841 -
Rops5g00509 349 Pfam Ring finger domain 206 248 IPR001841 -
Rops5g00509 349 SUPERFAMILY RING/U-box 190 255 - -
Rops5g00509 349 Pfam zinc-ribbon 18 50 IPR039525 GO:0061630
Rops5g00509 349 MobiDBLite consensus disorder prediction 304 349 - -
Rops5g00509 349 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Rops5g00509 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 254 IPR013083 -
Rops5g00509 349 CDD RING-H2_RNF126-like 206 248 - -
Rops5g00509 349 MobiDBLite consensus disorder prediction 258 285 - -
Rops5g00509 349 FunFam E3 ubiquitin-protein ligase RING1-like 168 254 - -
Rops5g00509 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 252 - -
Rops5g00509 349 MobiDBLite consensus disorder prediction 304 336 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops5g00509 Rops-Chr5 8612174 8617318 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00509 151 261 C3H Transcription Factor Family AT5G15820 51.351 2.58e-35 130
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00509 K11982 - gmx:100784504 412.92
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00509 5 8612174 8617318 Rops5g00509 5 8612174 8617318 ECH