Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops5g00509 | ATGTCTTCTGCCGGCGGCGGTGACGGCGGTGTTATCTCCAGCGAACCTCGCCAATACTTTTGCCACCAGTGCGAACGCACCGTTTCAATTTCCCCTTCCTCCTCCGATCTTATCTGCCCCAATTGCAACGGTGGCTTCCTCGAAGAACTCGAAATCCCAATCCCTAACCCTAACCCTGTCAATAATCCCTTCTTATCCTTCACCACCTCCGAATTCCCCGCTGCCGGCGTCGGATTTCCTCTCGTATTCTCCGGTGGTGCCACTCAACCCTTCGATGATCTATTCAGCAACCGATCATCGCCTTCGCAGTCTCCATTCACCGGCGAAGCGTTCAATCCGATCATGTTCCTCCAGAACTATGTCCAAAACCTAAGATCAGGAGGCGCCAACGTCCAATTCGTGATCGAAAACTCCGGAGACCCTAGCGGAACGTTCCGGTTCCCCGGAAATTTGAACTCCGGCGATTACTTCTTCGGTCCTGGCCTCGAGGAGTTGATCCAGCAACTTGCGGAGAACGATCCTAACCGTCACGGTACTCCCCCAGCGTCGAAGTCCGCCGTGGAGGGGCTTCCGGAAATTTCCGTTACGGAGGATCTGCTTTCATCGGATTCTTCGCAATGCGCTGTGTGCAAAGACACGTTTGTCCTCGGCGAGAAAGCGAAGCAGATGCCATGCAAACACATTTATCATTCGGATTGCATAATGCCATGGTTGGAATTGCACAATTCTTGCCCCGTTTGTCGTTACGAGTTGCCCACCGATGATCCCGATTATGAGCAGAGGGCTCACCCTGGTGGGGTGGCGCCGGTGGGGCCCGGTGGATCTGCTGATTCTACCGGTGGAGATAATTCACAGAGAAGGAGGTTTAGGGTGTCTTTGCCGCTTTCGTTAAGGCAATTTGCTACTTCTGTTGCTGAGACAAGCAATGTTGGGAATGCTAATAACAACAACAACAATAGCAATAGTGGAAATAATAGTGGGCAATCGAATTCTGAAAGCAGGGGGAATGAGAATTTTGAATCGGAGACCAGACAAGAAGATCTTGATTGA | 1050 | 0.5162 | MSSAGGGDGGVISSEPRQYFCHQCERTVSISPSSSDLICPNCNGGFLEELEIPIPNPNPVNNPFLSFTTSEFPAAGVGFPLVFSGGATQPFDDLFSNRSSPSQSPFTGEAFNPIMFLQNYVQNLRSGGANVQFVIENSGDPSGTFRFPGNLNSGDYFFGPGLEELIQQLAENDPNRHGTPPASKSAVEGLPEISVTEDLLSSDSSQCAVCKDTFVLGEKAKQMPCKHIYHSDCIMPWLELHNSCPVCRYELPTDDPDYEQRAHPGGVAPVGPGGSADSTGGDNSQRRRFRVSLPLSLRQFATSVAETSNVGNANNNNNNSNSGNNSGQSNSESRGNENFESETRQEDLD* | 350 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops5g00509 | 349 | SMART | ring_2 | 207 | 247 | IPR001841 | - | |
Rops5g00509 | 349 | Pfam | Ring finger domain | 206 | 248 | IPR001841 | - | |
Rops5g00509 | 349 | SUPERFAMILY | RING/U-box | 190 | 255 | - | - | |
Rops5g00509 | 349 | Pfam | zinc-ribbon | 18 | 50 | IPR039525 | GO:0061630 | |
Rops5g00509 | 349 | MobiDBLite | consensus disorder prediction | 304 | 349 | - | - | |
Rops5g00509 | 349 | ProSiteProfiles | Zinc finger RING-type profile. | 207 | 248 | IPR001841 | - | |
Rops5g00509 | 349 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 254 | IPR013083 | - | |
Rops5g00509 | 349 | CDD | RING-H2_RNF126-like | 206 | 248 | - | - | |
Rops5g00509 | 349 | MobiDBLite | consensus disorder prediction | 258 | 285 | - | - | |
Rops5g00509 | 349 | FunFam | E3 ubiquitin-protein ligase RING1-like | 168 | 254 | - | - | |
Rops5g00509 | 349 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 104 | 252 | - | - | |
Rops5g00509 | 349 | MobiDBLite | consensus disorder prediction | 304 | 336 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops5g00509 | Rops-Chr5 | 8612174 | 8617318 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops5g00509 | 151 | 261 | C3H Transcription Factor Family | AT5G15820 | 51.351 | 2.58e-35 | 130 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops5g00509 | K11982 | - | gmx:100784504 | 412.92 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops5g00509 | 5 | 8612174 | 8617318 | Rops5g00509 | 5 | 8612174 | 8617318 | ECH |