Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00504 ATGAATGGTAAAGCCTCCGTTTCTAAGGAACTCCATGCCAAGCACACCAAGATCTTAGAGGGACTTCTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGAACAAGGCACCACGATGGGCAAGTGTGAATTTAGGAATTTTCATTTGCATGCAATGTTCAGGAATCCACCGAAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATATATGGGTAATACAAAGTCAAATAAGCACTGGGAAGCAAAACTGCCGCCAAATTTTGACAGAAATGGATATGGAATTGAGAAGTTTATTTGTGCCAAGTATGTGGAGAAAAGATGGGCTTCACAAGGTGAACTACAAACAGCTTCAAAATCAGCTGAAATAATCTTTAAATCAAATGAGTCACCAGCTGCAGGGGCCAAGAGTAGTATCCAAAAGAATAGAAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAGCACATGGCACAAATTCGGCCTCCAGTAGCAAGATTTCATGAGGGTCCCATAGATTTGCAAAAGAAGATTTCATCACCATTAAAGAGACCTTCCGCATCACTTGATTTTGATAACTCCATTGGAAAGAGCAATGGCACTGTTGATCTTTTTGCCTTGCATTCCATCCATGATGATAAACAGGATTTCTCAAATACACCTCCTCCTAGCTGGACAACATTTGATTCTCTTTCGGTAGATGTCACAAGATTACAATTGCAGACGCTCTTGCAGTGTTGCATGAACATTGGGCTGCATTATTCTGATGGATATGAATTAAGTCCCCCATCTGCACCAGTTTGGCATTGA 855 0.4152 MNGKASVSKELHAKHTKILEGLLKLPDNRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQYMGNTKSNKHWEAKLPPNFDRNGYGIEKFICAKYVEKRWASQGELQTASKSAEIIFKSNESPAAGAKSSIQKNRRLSLEESILVKHMAQIRPPVARFHEGPIDLQKKISSPLKRPSASLDFDNSIGKSNGTVDLFALHSIHDDKQDFSNTPPPSWTTFDSLSVDVTRLQLQTLLQCCMNIGLHYSDGYELSPPSAPVWH* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00504 284 SMART arf_gap_3 5 129 IPR001164 GO:0005096
Rops5g00504 284 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Rops5g00504 284 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Rops5g00504 284 CDD ArfGap 19 119 - -
Rops5g00504 284 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 248 IPR044520 GO:0005096
Rops5g00504 284 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Rops5g00504 284 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Rops5g00504 284 SUPERFAMILY ArfGap/RecO-like zinc finger 15 125 IPR037278 -
Rops5g00504 284 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Rops5g00504 284 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Rops5g00504 284 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00504 Rops-Chr5 8574202 8584028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00504 19 119 C2H2 Transcription Factor Family AT4G05330 49.533 1.21e-26 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00504 5 8574202 8584028 Rops5g00504 5 8574202 8584028 ECH