Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00501 ATGGGCACACTTTTTTCTTACGCGGTCTCCTCTCAGCTTTGCGCCGCCACACAACGGCTATTGGCCTGTTGTAGTTCAAAGATGGCTGATGCTCATGAGACTGATAAGAACATTGAGGCATGGAAAATTAAGAAATTGATCAAGGCACTTGAGGCTGCCAGAGGAAATGGGACGAGTATGATTTCCCTCATAATGCCCCCGCGTGATCAAATCGCTCGTGTTACCAAGATGCTTGGTGATGAGTTTGGAACTGCTTCAAACATCAAAAGTAGGGTGAATCGACAGTCTGTGCTTGGGGCAATTACTTCTGCTCAGCAGAGGCTTAAGCTTTATAATAAGGTTCCTCCAAATGGGCTTGTTCTGTATACAGGCACAATTGTGACCGAAGATGGGAAGGAAAAGAAGGTCACTATTGACTTTGAGCCTTTCAAACCTATCAATGCATCTCTCTATCTTTGTGACAACAAGTTTCACACAGAAGCTCTAAATGAACTCCTGGAATCTGATGACAAGTTTGGATTTATTATCATGGATGGAAATGGTACTCTGTTTGGGACATTGAGTGGTAATACAAGAGAGGTGCTTCACAAGTTTAGCGTGGATCTCCCCAAGAAACATGGAAGAGGAGGGCAATCAGCTCTACGGTTTGCCCGTCTTCGAATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCAGAACTTGCAACCCAGTTTTATATCAATCCTACTACCAGCCAGCCCAATGTTTCAGGATTAATACTTGCTGGTTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTAGATGTTTCTTATGGAGGGGAGAATGGGTTCAATCAAGCTATTGAACTATCTGCTGAAATTCTGTCCAGTGTAAAGTTTATTCAGGAGAAAAAATTGATTGGAAAATACTTTGAGGAAATCAGCCAGGATACTGGAAAGTATGTTTTTGGTGTTGATGATACTCTAAAAGCTCTTGAAATGGGAGCTGTGGAGACACTTATTGTCTGGGAGAATCTGGACATGACTAGGTATGTCTTAAAAAATAATGCTACAGGTGAGGTTGTTATTAAGCACTTAAACAAGGTACAGGAGGCTGACCAGAGCAATTTTAGGGATCCTGCGAGCTCTTCTGATTATGAGGTCCAGGAAAAGATGTCTCTGTTGGAGTGGTTTGCAAATGAATACAAACGGTTTGGTTGCAGTCTCGAGTTTGTCACCAATAAATCACAAGAAGGTTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGTGGTATCTTGCGTTACCAGCTTGATATGAGATCATTTGATGTTTTGTCTGATGATGGAGATGTGTATGATGATTCTGATTAG 1395 0.4194 MGTLFSYAVSSQLCAATQRLLACCSSKMADAHETDKNIEAWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIIMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPTTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSSVKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDMTRYVLKNNATGEVVIKHLNKVQEADQSNFRDPASSSDYEVQEKMSLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDVLSDDGDVYDDSD* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00501 464 SUPERFAMILY L30e-like 306 447 IPR029064 -
Rops5g00501 464 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 33 167 IPR024049 -
Rops5g00501 464 SUPERFAMILY Translational machinery components 169 303 - -
Rops5g00501 464 Gene3D - 306 464 IPR029064 -
Rops5g00501 464 FunFam Peptide chain release factor subunit 1 306 464 - -
Rops5g00501 464 Pfam eRF1 domain 2 171 304 IPR005141 -
Rops5g00501 464 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 30 455 IPR004403 GO:0003747|GO:0006415
Rops5g00501 464 Gene3D eRF1 domain 1 24 162 IPR024049 -
Rops5g00501 464 SMART eRF1_1_2 31 167 IPR005140 -
Rops5g00501 464 Gene3D eRF1 domain 2 163 304 IPR042226 -
Rops5g00501 464 FunFam Eukaryotic peptide chain release factor subunit 1 29 162 - -
Rops5g00501 464 Pfam eRF1 domain 3 308 445 IPR005142 -
Rops5g00501 464 Pfam eRF1 domain 1 45 165 IPR005140 -
Rops5g00501 464 NCBIfam peptide chain release factor aRF-1 39 444 IPR004403 GO:0003747|GO:0006415
Rops5g00501 464 FunFam Eukaryotic peptide chain release factor subunit 1 163 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00501 Rops-Chr5 8544942 8547804 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00501 28 464 Eukaryotic Initiation Factors Gene Family AT3G26618 89.931 0.0 817