Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00498 ATGATTGGTGGTTGTGGGTGTGAGATTGGAGGGTACTTGAATGCCTTTTGTTTCTCTGTCTCTGATGATTTTCAGACCAGGCCAATCTTCAATTTCGTGCTCATTTTCGAGTTCCACTGGAGATTATGGCAGGGCACGTTTCTTCTCTCTCTGATTTCCGCCGCCACAAATCGGTTATTGGTCTGTAATTGTTCAAAGATGGCTGATGGTCATGAGACTGATAAGAACATTGAGGTATGGAAAATCAAGAAATTGATCAAGGCTCTTGAGGCTGCCAGGGGAAATGGCACGAGTATGATTTCCCTTATCATGCCTCCACGTGATCAAATAGCTCGTGTTACCAAGATGCTTGGTGATGAGTTTGGAACTGCTTCAAACATTAAAAGCAGGGTGAATAGACAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTCAAGCTTTATAATAAGGTTCCTCCAAACGGGCTGGTTCTGTATACTGGCACAATTGTGACTGAAGATGGAAAGGAAAAGAAGGTGACCATTGATTTTGAGCCATTTAGACCCATCAATGCATCTCTCTATCTTTGTGACAACAAGTTTCACACTGAAGCTCTAAATGAGCTCCTGGAATCTGATGACAAGTTTGGATTTATCGTCATGGATGGAAATGGTACTCTGTTTGGGACCTTGAGTGGTAATACAAGAGAGGTGCTTCACAAGTTTAGTGTGGATCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTACGGTTTGCCCGTCTTCGCATGGAAAAGCGTCATAACTATGTGAGGAAGACCGCAGAGCTTGCAACCCAGTTTTATATCAATTCTGCTACCAGCCAGCCCAATGTATCTGGATTAATACTCGCAGGTTCAGCTGATTTCAAAACAGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTCGATGTTTCATATGGAGGGGAGAATGGGTTCAATCAAGCTATTGAATTATCTGCTGAAATTCTCGCCAATGTAAAGTTTATCCAGGAGAAAAGACTGATTGGAAAATACTTTGAGGAAATCAGCCAGGATACTGGGAAGTATGTTTTTGGGGTTGATGATACTCTAAAAGCTCTGGAGATGGGAGCTGTTGAGATACTTATTGTCTGGGAAAATCTGGATATGAATAGGTTTGTCTTAAAAAACAATGCTACTGGTGAGGTTGTCATTAAGCACTTCAACAAGGAACAGGAGGCCGACCAGAGCAATTTTAGGGATCCTGGGAGCTCTGCTGATTTTGAGGAAAGGAAGGTCACAATACCTGCACCAGCATGGGAGGTGGCAGCATGCGCTGCTGCTCCTCCTCCTCCCGCACCTCCTCCTCAGCTGTCTCTAGTGTTGCATGGAAAGTTTGGTTGTGAATCAAGATGCTTTGCCCCAAAAGCACTCTCTGATATGAGTTACTCTCTTGCTTGTTCACATATCTCTCAATTTATGATGCCACAAATTTCAGCAACATTGCTAGCAACAGCTGCTCCCCTGCTATCCGCTTGCACTCTGAAAGGTGAGAACCAAATCATGCTCCCCAAAGAAACACAACCTAGCATCAATGAAGTCTTTATTGGACCTGTCTGTCAATGCAACCTAGCATAG 1653 0.438 MIGGCGCEIGGYLNAFCFSVSDDFQTRPIFNFVLIFEFHWRLWQGTFLLSLISAATNRLLVCNCSKMADGHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINSATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDMNRFVLKNNATGEVVIKHFNKEQEADQSNFRDPGSSADFEERKVTIPAPAWEVAACAAAPPPPAPPPQLSLVLHGKFGCESRCFAPKALSDMSYSLACSHISQFMMPQISATLLATAAPLLSACTLKGENQIMLPKETQPSINEVFIGPVCQCNLA* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00498 550 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 70 435 IPR004403 GO:0003747|GO:0006415
Rops5g00498 550 Pfam eRF1 domain 3 347 411 IPR005142 -
Rops5g00498 550 FunFam Eukaryotic peptide chain release factor subunit 1 202 343 - -
Rops5g00498 550 NCBIfam peptide chain release factor aRF-1 79 439 IPR004403 GO:0003747|GO:0006415
Rops5g00498 550 Pfam eRF1 domain 2 210 343 IPR005141 -
Rops5g00498 550 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 72 206 IPR024049 -
Rops5g00498 550 SUPERFAMILY Translational machinery components 208 342 - -
Rops5g00498 550 Gene3D eRF1 domain 1 64 201 IPR024049 -
Rops5g00498 550 Gene3D eRF1 domain 2 202 343 IPR042226 -
Rops5g00498 550 Pfam eRF1 domain 1 84 204 IPR005140 -
Rops5g00498 550 SUPERFAMILY L30e-like 344 435 IPR029064 -
Rops5g00498 550 SMART eRF1_1_2 70 206 IPR005140 -
Rops5g00498 550 Gene3D - 345 443 IPR029064 -
Rops5g00498 550 FunFam Eukaryotic peptide chain release factor subunit 1 68 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00498 Rops-Chr5 8499975 8510887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00498 67 436 Eukaryotic Initiation Factors Gene Family AT5G47880 89.516 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00498 K03265 - gmx:100785916 697.582