Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00486 ATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCGCTATAAAAGAAGGAGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCTGTGCACGAGCCTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATAGGGGACCGACAAACTGGAAAAACAGCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCAATTACTGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTCTAGTAATTTATGCAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAAAATTGCTCCATATGAGAGAGCCATTCTAAGTACTATAAATAATGAATTACTACAATCACTAAAAGGTGGACTAACTAGCGAAAGAAAGATAGAACCAGATGCATTCTTAAAAGAAAAAGCACTTTCTTACATATGA 1365 0.441 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDKIAPYERAILSTINNELLQSLKGGLTSERKIEPDAFLKEKALSYI* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00486 454 ProSitePatterns ATP synthase alpha and beta subunits signature. 313 322 IPR020003 GO:0005524
Rops5g00486 454 Pfam ATP synthase alpha/beta chain, C terminal domain 329 427 IPR000793 GO:0015986
Rops5g00486 454 FunFam ATP synthase subunit alpha, mitochondrial 43 329 - -
Rops5g00486 454 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 98 322 IPR000194 GO:0005524
Rops5g00486 454 CDD ATP-synt_F1_alpha_C 333 448 IPR000793 GO:0015986
Rops5g00486 454 Gene3D - 1 43 IPR023366 -
Rops5g00486 454 Hamap ATP synthase subunit alpha [atpA]. 1 454 IPR005294 GO:0015986|GO:0045261|GO:0046933
Rops5g00486 454 NCBIfam F0F1 ATP synthase subunit alpha 1 431 IPR005294 GO:0015986|GO:0045261|GO:0046933
Rops5g00486 454 CDD F1-ATPase_alpha_CD 43 325 IPR033732 GO:0032559
Rops5g00486 454 Gene3D - 44 329 IPR027417 -
Rops5g00486 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 328 IPR027417 -
Rops5g00486 454 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 43 IPR036121 GO:0046034|GO:1902600
Rops5g00486 454 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 331 431 - -
Rops5g00486 454 Gene3D - 330 452 IPR038376 -
Rops5g00486 454 Pfam ATP synthase alpha/beta family, beta-barrel domain 2 41 IPR004100 GO:0046034|GO:1902600
Rops5g00486 454 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 450 IPR005294 GO:0015986|GO:0045261|GO:0046933
Rops5g00486 454 FunFam ATP synthase subunit alpha 330 453 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00486 9 328 Primary Pumps ATPases(2) AT4G38510 26.444 1.97e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00486 K02132 - gmx:15308608 845.499