Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00484 ATGAATCAGTATCGGCGATCTTTAGCTTCTTCTTCTCAAGTGTTCATCATGGTCAGAAAGAGGAGAACAGAAGCACCAAGTGGTGGTGAAAGCTCTGAGGCTCAACGTCCTGCTGAAAGGAGTGCTCCACCTCCACAACAACAGGCTGCTGCTGCAGGAGGTGCAGGGCCCCAAGGAGGTAGAGGTTGGGGTCCCCAAGGTGGTCGTGGTGGTTATGGCGGTGGGGGTCGTGGCCGTGGAATGCCCCAACAGCAATATGGTGCCCCCCAGGAGTATCAAGGTAGGGGCAGAGGTGGGCCTTCTCAGCAAGGAGGTCGTGGAGGATATGGTGGTGGATATAGTGGTAGCCGGGGCGGTGGTGGCAGTAGTGGTGGTGGTGTTGGCAGTGGCCGTGGTGTGGGTCCTTCATACGGTGGACCTGCTAGGCCACCAGTACCCGAGCTGCACCAAGCAACCTCAGTTCCATATCAATCTGGGGTGACTCCTCAGCCTACATCATCTGAGTCCAGTTCTTCCCAGCTGCCCGAAACTTCTGAAGTGGAAGAGCAAATGGGGCAGATGGTCCTTCAATCTGAGGCTACTCCTACTCCTCCTCCAGCAAGCAAATCATCAGTGAGGTTTCCTCTTCGGCCTGGAAAGGGTAGCCATGGCACTAAGTGTATTGTTAAGGCCAATCACTTCTTTGCTGAGTTACCTAACAAAGATCTGCATCAATATGATGTAACAATTACTCCAGAAGTGACTTCTAGAGGTGTGAACCGTGCTGTTATGGAGCAGCTGGTGAAGCTGTACCGTGAATCTCATCTAGGAAGGAGACTTCCTGCTTATGATGGCCGCAAGAGCCTCTATACTGCAGGGCCACTTCCTTTTGTGTCTAGGGAGTTTAGAATCACCCTTGCCGACGAGGATGATGGAGCTGGAGGAGGGCAGAGGAGGGACAGAGAGTTTAAAGTTGTGATAAAATTGGCTGCAAAAGCAGACCTTCACCATTTGGGACTCTTTTTGCAAGGGAAGCAAACTGATGCTCCTCAGGAAGCTCTCCAAGTACTTGACATTGTTCTGCGTGAACTTCCTACTACCAGGTATTGTCCTGTTGGAAGGTCATTTTATTCACCTGATCTTGGTAGAAGGCAGCCTTTAGGTGATGGACTGGAAAGTTGGCGTGGATTTTATCAAAGCATTCGTCCCACTCAAATGGGACTGTCTCTCAACATTGATATGTCCTCAACTGCATTTATTGAGCCTTTGCCTGTAATCGACTTTGTCACCCAATTGCTGAACAGGGATGTCTCCACAAGACCTCTGTCTGATGCTGATCGTGTTAAGATCAAAAAAGCACTCCGAGGTATCAAAGTTGAAGTAACTCATCGTGGCAACATGAGAAGAAAATATCGTATCTCTGGTCTTACTTCTCAGGCTACCAGAGAGTTGACATTCCCTGTTGATGAAAGAGGGACCATGAAGTCTGTTGTTGAGTATTTCTATGAGACATATGGTTTTGTTATTCAGCATACTCAGTGGCCTTGTTTGCAAGTGGGCAATTCCCAGAGACCAAACTATCTACCAATGGAGGTTTGCAAGATCGTAGAAGGCCAACGGTACTCTAAGAGGTTGAATGAGAGGCAGATTACTGCTTTGCTAAAAGTCACATGCCAGCGTCCTGTTGAGAGGGAGCGTGATATCATGCAGACAGTACATCACAATGCCTATCATGAAGACCCTTATGCTAGAGAGTTTGGAATCAAAATTAGCGAGAAGCTTGCTCAAGTAGAAGCTCGCATCCTTCCACCACCTTGGCTCAAATATCATGATACGGGAAGAGAGAAGGATTGTCTACCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTTAATGGAGGAACAGTTAACTACTGGTTCTGCATTAACTTTTCAAGGAATGTGCAAGATAGTGTTGCTCGTGGCTTTTGCTATGAACTTGCCCAGATGTGTTACATATCTGGCATGGCATTCAATCCAGAACCAGTAGTTCCACCACTTAGTGCTCGTCCTGACCAAGTGGAAAAGGTTCTGAAAACTCGGTATCATGATGCCAAGAACAAACTGCAGGGAAGGGAGCTTGATCTGCTTATTGTTATTTTGCCTGATAATAATGGCTCTCTTTATGGTGACCTTAAGCGTATATGTGAGACTGATCTTGGGCTTGTGTCCCAATGCTGTTTAACTAAACATGTCTTCAAAATGAGCAAGCAGTACCTTGCAAATGTTTCTTTGAAAATTAATGTCAAGGTTGGAGGAAGAAACACTGTGCTTGTTGATGCGCTTTCCAGACGCATTCCCTTGGTCAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTCACCCATCCACATCCTGGAGAGGATTCAAGTCCCTCAATAGCAGCTGTTGTGGCTTCTCAAGATTGGCCTGAAATTACGAAGTATGCTGGTCTTGTTTGTGCCCAAGCACATCGACAGGAGCTCATTCAAGATCTTTTCAAACAATGGCAAGATCCAGCGAGAGGAACATTAACTGGCGGAATGATCAAGGAACTTCTTATATCTTTCCGGAGGGCTACTGGACAAAAGCCCCAGCGCATCATATTTTACAGGGATGGTGTAAGTGAGGGGCAGTTTTATCAAGTTCTACTGTTTGAGCTTGATGCTATCCGCAAGGCTTGTGCATCATTGGAACCAAACTATCAGCCTCCTGTGACTTTTGTGGTGGTTCAAAAGCGTCATCACACTAGGCTCTTTGCCAGTAACCATCATGACAGGAGTTCTGTGGACCGGAGTGGCAATATACTGCCTGGCACAGTTGTAGACTCTAAAATTTGCCATCCAACTGAATTTGACTTTTACCTTTGTAGTCATGCTGGAATACAGGGTACAAGTCGTCCAGCTCATTACCATGTGTTGTGGGATGAAAACAATTTCACTGCTGATGCTTTACAAACTCTCACAAACAACCTCTGCTACACATATGCTAGATGCACTCGGTCTGTTTCTATAGTGCCTCCTGCATACTATGCTCACTTGGCTGCATTTAGGGCTCGGTTTTATATGGAACCTGAGACATCAGATAGTGGATCCATGACAAGTGGTGCTGTTGCTGGGAGAGGTGGAATGGGGGGTGGTGGTGGACGTAGTACTCGTGCACCTGGTGTTAATGCTGCTGTGAGACCCTTACCTGCACTCAAGGAGAATGTGAAGAGGGTCATGTTTTATTGCTAA 3240 0.4685 MNQYRRSLASSSQVFIMVRKRRTEAPSGGESSEAQRPAERSAPPPQQQAAAAGGAGPQGGRGWGPQGGRGGYGGGGRGRGMPQQQYGAPQEYQGRGRGGPSQQGGRGGYGGGYSGSRGGGGSSGGGVGSGRGVGPSYGGPARPPVPELHQATSVPYQSGVTPQPTSSESSSSQLPETSEVEEQMGQMVLQSEATPTPPPASKSSVRFPLRPGKGSHGTKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGRRLPAYDGRKSLYTAGPLPFVSREFRITLADEDDGAGGGQRRDREFKVVIKLAAKADLHHLGLFLQGKQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGDGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSTRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNSQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAREFGIKISEKLAQVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNYWFCINFSRNVQDSVARGFCYELAQMCYISGMAFNPEPVVPPLSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVSLKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPARGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGGMGGGGGRSTRAPGVNAAVRPLPALKENVKRVMFYC* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00484 1079 SMART DUF1785_2 363 415 IPR014811 -
Rops5g00484 1079 SMART PAZ_2_a_3 420 552 IPR003100 GO:0005515
Rops5g00484 1079 Gene3D - 594 767 - -
Rops5g00484 1079 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 197 1025 - -
Rops5g00484 1079 CDD Piwi_ago-like 574 1024 IPR045246 -
Rops5g00484 1079 Pfam Glycine-rich region of argonaut 87 196 IPR024357 -
Rops5g00484 1079 SMART Piwi_a_2 704 1025 IPR003165 GO:0003676
Rops5g00484 1079 MobiDBLite consensus disorder prediction 1 215 - -
Rops5g00484 1079 FunFam protein argonaute 10-like 773 1079 - -
Rops5g00484 1079 Pfam Argonaute linker 2 domain 556 602 IPR032472 -
Rops5g00484 1079 ProSiteProfiles PAZ domain profile. 416 530 IPR003100 GO:0005515
Rops5g00484 1079 MobiDBLite consensus disorder prediction 151 200 - -
Rops5g00484 1079 MobiDBLite consensus disorder prediction 1 17 - -
Rops5g00484 1079 Gene3D - 773 1079 IPR036397 GO:0003676
Rops5g00484 1079 Pfam PAZ domain 420 545 IPR003100 GO:0005515
Rops5g00484 1079 FunFam Protein argonaute-2 409 535 - -
Rops5g00484 1079 CDD PAZ_argonaute_like 415 529 - -
Rops5g00484 1079 SUPERFAMILY Ribonuclease H-like 690 1025 IPR012337 -
Rops5g00484 1079 MobiDBLite consensus disorder prediction 1028 1056 - -
Rops5g00484 1079 Pfam N-terminal domain of argonaute 219 354 IPR032474 -
Rops5g00484 1079 FunFam Argonaute 10 594 767 - -
Rops5g00484 1079 Gene3D paz domain 409 534 - -
Rops5g00484 1079 Pfam Argonaute linker 1 domain 364 414 IPR014811 -
Rops5g00484 1079 Pfam Piwi domain 705 1024 IPR003165 GO:0003676
Rops5g00484 1079 SUPERFAMILY PAZ domain 410 570 IPR036085 GO:0005515
Rops5g00484 1079 Pfam Mid domain of argonaute 613 688 IPR032473 -
Rops5g00484 1079 ProSiteProfiles Piwi domain profile. 704 1025 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00484 Rops-Chr5 8385473 8395302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00484 91 1079 Eukaryotic Initiation Factors Gene Family AT1G48410 81.307 0.0 1640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00484 K11593 - gmx:100780375 1807.73