Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00483 ATGTCACCGGTTGGTTTACCACCTGGTTTTAGGTTTCATCCAACAGACGAAGAGCTTGTCAACTATTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAGGTTGATCTTTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCAAGTAGAGACCCTGAGTGGTACTTCTTTGGACCTCGGGATAGGAAATACCCCAATGGTTTCAGAACAAATAGAGCAACAAGAGCAGGGTACTGGAAGTCTACTGGGAAAGACAGAAGAGTTTCATGCCAAAGCAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGCAGAGCTCCTCAAGGAATCAGAACTGACTGGGTTATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAGGACACCACTGGATTACAGGATACTTATGCATTGTGCCGTGTGTTCAAGAAAAATGGAATATGTTCTGATATTGAAGAGCAAGGACAATGTAGTATGTCACTAATTGAGAGCTCCCAAACCATAATTAATGAGTGTGAAACCATGTCTCCTGATATACCAGGGGCATCATCTTCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAATTCATCACAGAAGATGCATGGTATTCTTCTAATGCATCAATGGTTGGTGGTGAAGAAGTCTCACATGTTACATTTACAAACTAA 714 0.4076 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSDIEEQGQCSMSLIESSQTIINECETMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNASMVGGEEVSHVTFTN* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00483 237 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Rops5g00483 237 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 192 - -
Rops5g00483 237 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Rops5g00483 237 FunFam Nac domain-containing protein 86 15 159 - -
Rops5g00483 237 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Rops5g00483 237 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00483 Rops-Chr5 8339219 8342512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00483 1 226 NAC Transcription Factor Family AT3G17730 75.934 1.33e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g00483 NAM 9.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00483 - - gmx:100784495 498.819