Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00481 ATGGTTGCTATGGCTAACATTGTTGCTGTTGGGGTAGCTGTTCTTCCTCTAACTCCATTACCCAAAACAACAAAGTTAAATGCTTTCTCTTTCGGCCATAAAACCAAGAGCCAAAGACAGAGACTTTATCTTAATTTCTCCCAAACCAACCACAGAATAACCCAATTCCCTTCATTATCATCACCACTCAGAAACAGAGATAGTTGCTTTTTGTTGGGGTGTCTCCCTTCTACTTCTGAATCCTCAAGCTCATCTTCCAATGTTAAACCCTCTTCTGCTGCTCCTTCAACTAAGCTCTATGTCAGTGGGTTATCATTTCGTACCACTGAAGATAGCTTGCGAAATGCGTTTAAGGATTTTGGTCAACTTGTGGAAGTCAATCTGGTGATGGATAAAATTGCAAATAGACCACGAGGATTTGCTTTTCTTCGTTATGCAACTGAAGAGGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCTCAGCTAAGGCAAAAGACATAA 552 0.4112 MVAMANIVAVGVAVLPLTPLPKTTKLNAFSFGHKTKSQRQRLYLNFSQTNHRITQFPSLSSPLRNRDSCFLLGCLPSTSESSSSSSNVKPSSAAPSTKLYVSGLSFRTTEDSLRNAFKDFGQLVEVNLVMDKIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSQLRQKT* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00481 183 PANTHER NUCLEOLAR PROTEIN 8 79 180 - -
Rops5g00481 183 SMART rrm1_1 98 171 IPR000504 GO:0003723
Rops5g00481 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Rops5g00481 183 Gene3D - 74 183 IPR012677 -
Rops5g00481 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Rops5g00481 183 SUPERFAMILY RNA-binding domain, RBD 88 180 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00481 Rops-Chr5 8326727 8329995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00481 97 178 Eukaryotic Initiation Factors Gene Family AT4G34110 29.268 1.40e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00481 - - gmx:100305561 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00481 5 8326727 8329995 Rops5g00481 5 8326727 8329995 ECH