Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00479 ATGCTGCTGCTTGATTGGAAGCAGGAACTGAAATATATTCTAGACCAAACACAAGGCACAAGGTCAACCATAATTGGCACAGCTAGTAACTGTCATTCCAAAGGTGGAACAAATTCTGAAAATGTTGAAAAATTGCGGAATACACCTTCTGTTGGAAACAACCATACTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAATGGACTGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAACTGTATGGTCGTGGTTGGCGTCAAATTGAAGAGCATATAGGTACCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGTGAATCTGATGGTATTGCTGAAAGTTCTATTCAGCCAATTGACATACCCCCTCCTCGACCTAAGAGGAAACCCCTTCATCCATATCCCCGTAAATCAGTTGACTCTTTCAAAGGACAGTCCATTGTCAATGAACCAGAAAAATCTCCATCTGTAAACCTTTCAGTTGCAGAGAAAGACACCCCGTCTCCAACCTCTGTGCTATCTGCATTTGGTTCAGAAGCATTTGGATCAGCATTTTCTGAGCAGACTAACAGATGTCTTTCACCAAATTCTTGCACCACTGATATTCACTCGGTCAACTTGTCACCTGTTGAAAAGGATAATGATTGCATGACATCCAAACCATCTGAGGAGGAAGAGAAAGGGTCTCCAACTTCAGTCCCTTTGTCCACTAGTTTAAACCCTCTCATGTGCATGAAATCTGAGATTAGTTCCAAGGAAACTGAATGTTTCAAAGAAGATGCTAACAAGATGCCACACACCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGGTGGGTAATCAGAAGTCAATGAAGGTAGAAGATGAGAATATTAAGCCTATAACTATCAAGTCCGATGAAGTGGATGATGTTGGGAATGAAATGGTTGGCCAAGCAGTTGTATCAGAGCAACTTGATACACAATTATCACTAGGCATGTGTAGTAGTGACTGGCACATAACACCTGATGGAACCAAAGTGACCAACATAGAACAAGCACCTGATTCATCTTTGCCATGGTGGAGTCTGTACCAAGGCCTTCCAGCTTTCTACCAAAGGCCATGCAATCATGAGATCCTAAATCCTATGCCCCTTCGGCCCTCTTTGAAGGTAAGAGCAAAAGAGGAGGACAGTTCTTGCACTGGTTCTAATACTGAATCAGTTTGTGATGTGGAAAATCAAGGCAAGAACTCAGATACTGTTGATTCTCAATGTCAAAAATCTATTGAGGAAGGAGTAGCACCCCAAAAGTCTGGAAGGGGTTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGCAAATTCTTTAATTGTTAACTTGGAAGAGAGGGAGGGGCAACGAGCTAGGGTGTGCTCATAG 1446 0.4177 MLLLDWKQELKYILDQTQGTRSTIIGTASNCHSKGGTNSENVEKLRNTPSVGNNHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGIAESSIQPIDIPPPRPKRKPLHPYPRKSVDSFKGQSIVNEPEKSPSVNLSVAEKDTPSPTSVLSAFGSEAFGSAFSEQTNRCLSPNSCTTDIHSVNLSPVEKDNDCMTSKPSEEEEKGSPTSVPLSTSLNPLMCMKSEISSKETECFKEDANKMPHTTSIKLFGRTVSMVGNQKSMKVEDENIKPITIKSDEVDDVGNEMVGQAVVSEQLDTQLSLGMCSSDWHITPDGTKVTNIEQAPDSSLPWWSLYQGLPAFYQRPCNHEILNPMPLRPSLKVRAKEEDSSCTGSNTESVCDVENQGKNSDTVDSQCQKSIEEGVAPQKSGRGFVPYKRCLAERDANSLIVNLEEREGQRARVCS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00479 481 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 116 IPR006447 GO:0003677
Rops5g00479 481 SUPERFAMILY Homeodomain-like 63 117 IPR009057 -
Rops5g00479 481 MobiDBLite consensus disorder prediction 127 183 - -
Rops5g00479 481 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Rops5g00479 481 MobiDBLite consensus disorder prediction 408 429 - -
Rops5g00479 481 FunFam protein REVEILLE 6 isoform X1 71 119 - -
Rops5g00479 481 Gene3D - 71 118 - -
Rops5g00479 481 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Rops5g00479 481 PANTHER SWI/SNF COMPLEX-RELATED 42 431 - -
Rops5g00479 481 SMART sant 68 116 IPR001005 -
Rops5g00479 481 CDD SANT 71 114 IPR001005 -
Rops5g00479 481 MobiDBLite consensus disorder prediction 155 183 - -
Rops5g00479 481 ProSiteProfiles SANT domain profile. 67 118 IPR017884 -
Rops5g00479 481 MobiDBLite consensus disorder prediction 222 252 - -
Rops5g00479 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Rops5g00479 481 MobiDBLite consensus disorder prediction 404 429 - -
Rops5g00479 481 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00479 Rops-Chr5 8322405 8326122 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops5g00479 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00479 - - gmx:778089 681.789