Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops5g00479 | ATGCTGCTGCTTGATTGGAAGCAGGAACTGAAATATATTCTAGACCAAACACAAGGCACAAGGTCAACCATAATTGGCACAGCTAGTAACTGTCATTCCAAAGGTGGAACAAATTCTGAAAATGTTGAAAAATTGCGGAATACACCTTCTGTTGGAAACAACCATACTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAATGGACTGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAACTGTATGGTCGTGGTTGGCGTCAAATTGAAGAGCATATAGGTACCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGTGAATCTGATGGTATTGCTGAAAGTTCTATTCAGCCAATTGACATACCCCCTCCTCGACCTAAGAGGAAACCCCTTCATCCATATCCCCGTAAATCAGTTGACTCTTTCAAAGGACAGTCCATTGTCAATGAACCAGAAAAATCTCCATCTGTAAACCTTTCAGTTGCAGAGAAAGACACCCCGTCTCCAACCTCTGTGCTATCTGCATTTGGTTCAGAAGCATTTGGATCAGCATTTTCTGAGCAGACTAACAGATGTCTTTCACCAAATTCTTGCACCACTGATATTCACTCGGTCAACTTGTCACCTGTTGAAAAGGATAATGATTGCATGACATCCAAACCATCTGAGGAGGAAGAGAAAGGGTCTCCAACTTCAGTCCCTTTGTCCACTAGTTTAAACCCTCTCATGTGCATGAAATCTGAGATTAGTTCCAAGGAAACTGAATGTTTCAAAGAAGATGCTAACAAGATGCCACACACCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGGTGGGTAATCAGAAGTCAATGAAGGTAGAAGATGAGAATATTAAGCCTATAACTATCAAGTCCGATGAAGTGGATGATGTTGGGAATGAAATGGTTGGCCAAGCAGTTGTATCAGAGCAACTTGATACACAATTATCACTAGGCATGTGTAGTAGTGACTGGCACATAACACCTGATGGAACCAAAGTGACCAACATAGAACAAGCACCTGATTCATCTTTGCCATGGTGGAGTCTGTACCAAGGCCTTCCAGCTTTCTACCAAAGGCCATGCAATCATGAGATCCTAAATCCTATGCCCCTTCGGCCCTCTTTGAAGGTAAGAGCAAAAGAGGAGGACAGTTCTTGCACTGGTTCTAATACTGAATCAGTTTGTGATGTGGAAAATCAAGGCAAGAACTCAGATACTGTTGATTCTCAATGTCAAAAATCTATTGAGGAAGGAGTAGCACCCCAAAAGTCTGGAAGGGGTTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGCAAATTCTTTAATTGTTAACTTGGAAGAGAGGGAGGGGCAACGAGCTAGGGTGTGCTCATAG | 1446 | 0.4177 | MLLLDWKQELKYILDQTQGTRSTIIGTASNCHSKGGTNSENVEKLRNTPSVGNNHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGIAESSIQPIDIPPPRPKRKPLHPYPRKSVDSFKGQSIVNEPEKSPSVNLSVAEKDTPSPTSVLSAFGSEAFGSAFSEQTNRCLSPNSCTTDIHSVNLSPVEKDNDCMTSKPSEEEEKGSPTSVPLSTSLNPLMCMKSEISSKETECFKEDANKMPHTTSIKLFGRTVSMVGNQKSMKVEDENIKPITIKSDEVDDVGNEMVGQAVVSEQLDTQLSLGMCSSDWHITPDGTKVTNIEQAPDSSLPWWSLYQGLPAFYQRPCNHEILNPMPLRPSLKVRAKEEDSSCTGSNTESVCDVENQGKNSDTVDSQCQKSIEEGVAPQKSGRGFVPYKRCLAERDANSLIVNLEEREGQRARVCS* | 482 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops5g00479 | 481 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 67 | 116 | IPR006447 | GO:0003677 | |
Rops5g00479 | 481 | SUPERFAMILY | Homeodomain-like | 63 | 117 | IPR009057 | - | |
Rops5g00479 | 481 | MobiDBLite | consensus disorder prediction | 127 | 183 | - | - | |
Rops5g00479 | 481 | ProSiteProfiles | Myb-like domain profile. | 64 | 114 | IPR001005 | - | |
Rops5g00479 | 481 | MobiDBLite | consensus disorder prediction | 408 | 429 | - | - | |
Rops5g00479 | 481 | FunFam | protein REVEILLE 6 isoform X1 | 71 | 119 | - | - | |
Rops5g00479 | 481 | Gene3D | - | 71 | 118 | - | - | |
Rops5g00479 | 481 | Pfam | Myb-like DNA-binding domain | 69 | 112 | IPR001005 | - | |
Rops5g00479 | 481 | PANTHER | SWI/SNF COMPLEX-RELATED | 42 | 431 | - | - | |
Rops5g00479 | 481 | SMART | sant | 68 | 116 | IPR001005 | - | |
Rops5g00479 | 481 | CDD | SANT | 71 | 114 | IPR001005 | - | |
Rops5g00479 | 481 | MobiDBLite | consensus disorder prediction | 155 | 183 | - | - | |
Rops5g00479 | 481 | ProSiteProfiles | SANT domain profile. | 67 | 118 | IPR017884 | - | |
Rops5g00479 | 481 | MobiDBLite | consensus disorder prediction | 222 | 252 | - | - | |
Rops5g00479 | 481 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 64 | 118 | IPR017930 | - | |
Rops5g00479 | 481 | MobiDBLite | consensus disorder prediction | 404 | 429 | - | - | |
Rops5g00479 | 481 | MobiDBLite | consensus disorder prediction | 31 | 59 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops5g00479 | Rops-Chr5 | 8322405 | 8326122 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Rops5g00479 | Myb_DNA-binding | 1.6e-13 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops5g00479 | - | - | gmx:778089 | 681.789 |