Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00478 ATGGAGTATGGCAGTGGAGGAAGTGGGTCCCCTGGGGACCACCACCATCACCATGATGGTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACGGCTAATCAGATTCAAAGGCTTGAATCGATGTTCAAGGAGTGTCCACACCCAGATGAGAAGCAGAGGTTGCAGTTAAGTAGGGAATTAGGCTTGGCACCTAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCATGAAAGAGCTGATAACTGTGCACTAAGGTCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCCTTAAAAATGTTATTTGCCCCTCTTGTGGTGGTCCTCCTATCAATGAAGATTCTTATTTTGATGAACAAAAATTGAGATTGGAGAATGCCCAACTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCAGCTAAGTACATTGGAAGACCAATCTCTCAGCTTCCACCAGTTCAACCTATCCATGTATCTTCATTGGACTTGTCAATGGGGAGTTTTGGGGGGCATGGTTTGGGTGGACCTTCACTTGATCTTGATCTTCTTCCAGGGAGTTCTTCAACCATGCCACATGTGCCTTACCAACCTGCTTGTCTTTCTGAAATGGAAAAGTCCCTCATGTCTGATATTGCTTCAAATGCCATGGAAGAACTAGGTAGACTCTTGCAAACAAATGAGCCCTTATGGATGAAGTCAAGCCCTGATGGAAGAGATGTTCTTAACTTTGATACCTATGAAAGAATGTTCCCAAAGTCTAATAGTCGATTGAAGAACCCCAATGTTCGAATTGAAGCTTCCAGAGATTCAGGAGTTGTAATTATGAATGGCTTGACTTTGGTTGACATGTTCATGGACCCAAACAAGTGGATGGAGCTATTTCCCACTATTGTCACAATGGCAAGGACTATTGAAGTTATATCTTCAGGAATGATAGGTGGTCATAGTGGTTCTTTGCAATTGATGTATCAAGAGTTGCAAGTGCTTTCTCCGCTTGTTTCTACTAGAGAGTTCTACTTCCTGCGTTACTGTCAGCAAATTGAGCAAGGCTTATGGGCAATAGTTGATGTTTCATATGATTTTCCACAAGATAACCAATTTGCTCCTCAATTTCGATGCCATCGTCTTCCTTCTGGTTGCTTCATCCAAGACATGCCTAATGGATACTCCAAGGTTACTTGGATTGAACATGTAGAGATTGAAGATAAAACTCCAGTTCATAGGCTTTATAGAAATGTTATCTATAGTGGTATGGCATTTGGAGCACACAGATGGCTCACTACTCTTCAAAGGATGTGTGAAAGGCTTGCTTGTCTAATGGTTACAGGCAATTCTACTCGTGATCTTGAAGGAGTGATTCCATCTCCTGATGGAAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTCACAAATTTCTGTGCAAGTATTAGTGCATCAGCTAGTCACAGATGGACCACACTCTCTGGTTTGAATGAGATTGGAGTCAGAGTCACTGTGAGGAAGAGCACAGACCCTGGCCAACCTAATGGTGTAGTGCTAAGTGCAGCCACTACCATTTGGCTCCCAATTCCTCATCATGTTGTCTTTGAATTCATCAAGGATGAAAGGAAAAGACCTCAGTGGGATGTTCTTTCCAATAATAATCCAGTGCAAGAGGTTGCGCACATAGCAAATGGTTCACTCCCTGGTAACTGCATATCTGTGCTTAGAGCTTTCAATACAAGTCAAAACAACATGTTGATACTCCAAGAGAGTTGTGTGGACTCTTCTGGTTCCCTTGTGGTTTATTGTCCAATTGATTTACCAGCTATCAACGTAGCAATGAGTGGTGAAGACCCTTCATACATTCCACTATTACCATCAGGTTTCACAATTTCACCAGATGGACAACATGATCAAGGAGGAGATGGAGCATCAACAAGCTCAAACACAAACATTGGAGGAAGATCTGGTGGATCACTCATCACTGTTGCATTTCAAATTCTAGTGAGTAGTTTGCCATCTGCCAAGCTTAACATGGAGTCGGTGGCTACTGTTAATAGCCTCATTGGTGACACTGTCCAACAAATAAAGGCTGCTTTGAATTGTCCTAGTTCCTGA 2145 0.4289 MEYGSGGSGSPGDHHHHHDGSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRSENDKIRCENIAIREALKNVICPSCGGPPINEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHVSSLDLSMGSFGGHGLGGPSLDLDLLPGSSSTMPHVPYQPACLSEMEKSLMSDIASNAMEELGRLLQTNEPLWMKSSPDGRDVLNFDTYERMFPKSNSRLKNPNVRIEASRDSGVVIMNGLTLVDMFMDPNKWMELFPTIVTMARTIEVISSGMIGGHSGSLQLMYQELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRCHRLPSGCFIQDMPNGYSKVTWIEHVEIEDKTPVHRLYRNVIYSGMAFGAHRWLTTLQRMCERLACLMVTGNSTRDLEGVIPSPDGKRSMMKLAQRMVTNFCASISASASHRWTTLSGLNEIGVRVTVRKSTDPGQPNGVVLSAATTIWLPIPHHVVFEFIKDERKRPQWDVLSNNNPVQEVAHIANGSLPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPIDLPAINVAMSGEDPSYIPLLPSGFTISPDGQHDQGGDGASTSSNTNIGGRSGGSLITVAFQILVSSLPSAKLNMESVATVNSLIGDTVQQIKAALNCPSS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00478 714 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Rops5g00478 714 Gene3D - 13 98 - -
Rops5g00478 714 CDD START_ArGLABRA2_like 219 448 - -
Rops5g00478 714 SMART HOX_1 25 88 IPR001356 GO:0003677
Rops5g00478 714 Pfam START domain 225 449 IPR002913 GO:0008289
Rops5g00478 714 SUPERFAMILY Homeodomain-like 6 84 IPR009057 -
Rops5g00478 714 MobiDBLite consensus disorder prediction 1 34 - -
Rops5g00478 714 Coils Coil 132 152 - -
Rops5g00478 714 FunFam Homeobox-leucine zipper protein GLABRA 2 224 448 - -
Rops5g00478 714 ProSiteProfiles START domain profile. 215 452 IPR002913 GO:0008289
Rops5g00478 714 SMART START_1 224 449 IPR002913 GO:0008289
Rops5g00478 714 Pfam Homeodomain 27 82 IPR001356 GO:0003677
Rops5g00478 714 SUPERFAMILY Bet v1-like 216 450 - -
Rops5g00478 714 CDD homeodomain 26 85 IPR001356 GO:0003677
Rops5g00478 714 FunFam Homeobox-leucine zipper protein HDG1 14 100 - -
Rops5g00478 714 SUPERFAMILY Bet v1-like 470 706 - -
Rops5g00478 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 710 IPR042160 -
Rops5g00478 714 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Rops5g00478 714 Gene3D - 224 449 IPR023393 -
Rops5g00478 714 MobiDBLite consensus disorder prediction 641 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00478 Rops-Chr5 8293012 8296718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00478 22 714 Homeobox Transcription Factor Family AT1G73360 65.767 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops5g00478 START 3.4e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00478 K09338 - gmx:100785023 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00478 5 8293012 8296718 Rops5g00478 5 8293012 8296718 ECH