Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00473 ATGGATGAGGCATCCTCGCTTACCGGAAGAGCTAAGAAGATTCGAATTTTCTCCCTGATGGATGAGTCTATCTTAGATGTCATTTGTGAGAGACTAAGACAAAAGACATACATCAATGGAAGTAGAATTTTTGAGTCAGGGTGGTCTAGTAGACAAGATGGTCTTTATTGTGCGGGGAAAATTGGAGAAGATGGAATTGCAGTTCCTTTATCTGAAGGGGATGCTTGTGGTGAGGAACTTCTAACATGGTATCTTGAACATTCTTCTGTAAGCACAGATGGTAAAAAAGTACGGCTTCTGGGACAGAGGTTGCTTAGCAACAGGACAGTAAAATGCTTAACAAATGTGGAGGCTTTTTCGCTCAAAGCTGCAGACCTTGAAGAAGTCACAACCCTTTTCATGAGATCTTTGCAGAGTTTACGTGTTCAAGGACCCCTAAGGTAA 444 0.4189 MDEASSLTGRAKKIRIFSLMDESILDVICERLRQKTYINGSRIFESGWSSRQDGLYCAGKIGEDGIAVPLSEGDACGEELLTWYLEHSSVSTDGKKVRLLGQRLLSNRTVKCLTNVEAFSLKAADLEEVTTLFMRSLQSLRVQGPLR* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00473 147 Gene3D Jelly Rolls 14 135 IPR014710 -
Rops5g00473 147 SUPERFAMILY cAMP-binding domain-like 12 132 IPR018490 -
Rops5g00473 147 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00473 Rops-Chr5 8213396 8214981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00473 12 91 Ion Channels AT3G17700 56.627 8.79e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00473 K05391 - lja:Lj2g3v0632140.1 211.846