Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00471 ATGACTCGCTTTGAGAAAGATGAGGTGCCAATGCTGTCAGAAGTTCATGCACAACTATATGATGAATCTGTGGATTCTAATTACCGGAGACATGTATCCAGGAGTGCATCAATTTCTATTCCTATGGCTTCTTTGGAACCAAATGAGAGAGAGACTAATCTTGTGGGACATACTGGTCCACTTCGTAGTGAGAGAAAAACCCCCTTTGTGCAGATGAGTGGTCCACTATATGCTACCCCTGGAACTGGAAATCCTTTGCAGCATAGTATATTTGTGAGAGGAAACAATGTAGCGGATAGCAACACAGAAAAATTCTCAAATTTTGATGGCACGGATGAAAATCATTGGAATTACAACAATGATAAAAAAAATGAACACTTGATGAGATCTGGGCAACTGGGGATGTGTAATGATCCTTATTGCACTACTTGCCCTACATACTTCAAGGCTTCTCAGCAAAGAAACCCAAAAGCTTCAACTATATTTGATTCCAAGTTCCACAATTCTCTTTATGGAGATGCCAAAGAAACTAAGGTGGTCAACAAATATGTGTATGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCAAGTCCCAAGCTACTTTGTGTGGGAAGTCCTTTTTACAATGGCCATCATAGGATTGGGACTCTTGCTTTTTGCACTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAACAATGGATGAGGCATCGTCGCTTATCGGATTATCTCAAAAGGAGAGTACGACAGGCTGAACGGTATAATTGGGCTGCAACAAGGGGGGTTAATGAGGAAATGCTTTTGGAAGATTTGCCAGAAGATCTCCAGACCGATATAAGACGTCATCTCTTCAATTTTATTAAGAAAGTTCGAATTTTTGCCCTGATGGATGAGCCTGTCTTAGATGCCATTTGTGAGAGACTAAAACAGAAGACATACATCAAAGGAAGCAGAGTTTTGAGTCAAGGTGGTCTTGTAGAGAAGATGGTCTTTGTTGTGCGTGGAAAATTGGAGAGCGTTGGAGAAGATGGCATTGGAGTTAACTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCTGTAAGCACAGATGGTAAAAAGGTAAGGCTTCCAGGACAGAGGTTGCTGAGCAATAGAACAGTAAGATGCTTAACAAATGTGGAGGCATTTTCACTTCGAGCTGCAGACCTTGAAGAAGTCACAATTCTTTTCACAAGATTCTTGCGGAGCTCTCATGTCCAAGGATCTCTAAGGTATGTATCACCTTATTGGAGATCCCGTGCAGCAATCATAATTCAGGTTGCATGGAGATACAGGAAGAAGTGTCTTTGTCGTGCTAATACCATACAATCAGATCAACATTGA 1452 0.4174 MTRFEKDEVPMLSEVHAQLYDESVDSNYRRHVSRSASISIPMASLEPNERETNLVGHTGPLRSERKTPFVQMSGPLYATPGTGNPLQHSIFVRGNNVADSNTEKFSNFDGTDENHWNYNNDKKNEHLMRSGQLGMCNDPYCTTCPTYFKASQQRNPKASTIFDSKFHNSLYGDAKETKVVNKYVYALFWGFQQISTLAGNQVPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMRHRRLSDYLKRRVRQAERYNWAATRGVNEEMLLEDLPEDLQTDIRRHLFNFIKKVRIFALMDEPVLDAICERLKQKTYIKGSRVLSQGGLVEKMVFVVRGKLESVGEDGIGVNLSEGDACGEELLTWYLEHSSVSTDGKKVRLPGQRLLSNRTVRCLTNVEAFSLRAADLEEVTILFTRFLRSSHVQGSLRYVSPYWRSRAAIIIQVAWRYRKKCLCRANTIQSDQH* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00471 483 CDD CAP_ED 313 429 IPR000595 -
Rops5g00471 483 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 155 470 - -
Rops5g00471 483 SMART cnmp_10 313 445 IPR000595 -
Rops5g00471 483 SUPERFAMILY Voltage-gated potassium channels 179 241 - -
Rops5g00471 483 Pfam Ion transport protein 164 241 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops5g00471 483 ProSiteProfiles cAMP/cGMP binding motif profile. 313 381 IPR000595 -
Rops5g00471 483 Gene3D Helix hairpin bin 240 305 - -
Rops5g00471 483 SUPERFAMILY cAMP-binding domain-like 241 431 IPR018490 -
Rops5g00471 483 Gene3D Jelly Rolls 311 435 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00471 Rops-Chr5 8158925 8176374 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00471 149 391 Ion Channels AT3G17700 67.742 9.68e-100 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00471 K05391 - ccaj:109789004 523.472